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53-2841-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1601005 [Map]; Strand: w
      • AT5G05400.1 - [+] show detail - LRR and NB-ARC domains-containing disease resistance protein
        Distance: -636; Region: promoter
    Flanking Genome Sequence: 53-2841-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCGAATT GGAGACTCTT GAAGCTCCTC CTCACGATCT 
    ACCTATTTGC TAGTTTCAAA TAAAAAGAGG CATTTCTAGA ATACGAAATA 
    TTCAGATTTT GGTATTGTTA TTGTTTTAAA TCAATTCTCC AATCGATTTG 
    ATGGAAGATA CATGTCATTT CCAGTGACAG TGTGCGTAGA TAAAATTTTG 
    TATGTGTTTA AAAATGTCAA ATCATAGTCT ATATTATTTC TGTCTTCTCT 
    CAATTGTTGG AGCTAAGCTA TAAGGAAAAT GAATAAAAAG AGAGAATGTT 
    TGGGCTTAAT GGGCGTTTTC ATTCATCTGC AACGAAATAA TGGGCTTAAA 
    AAGATTTAAG GGACATGGGG TTGGAGTACG TAGGCAAGTG CGTGAGCTTA 
    CGTTAGCGAT GGCGTTAGAG ACACGTAGTT GATGAAGTGG CCTTGGTTTG 
    CAAAGGACAC ATGAGGCACA TGCAAAGGCC TATATGACTG CTTACAACTT 
    GCAGTTCCCA ATATTATAAG GTAATGGACC CTATCACCTC TTGCTCGAAG 
    CTAAGCCACC CAAGTTTGAG CTTCACCATT TGACACGTNT CTAGCTATAC 
    TTAATGNGTA ACTTTAACTG ATACTTAATG TTTAAACATT TCTGGCTGAC 
    CATTCGTATG AACATTATGA TTACCNCCCG GCCGCACACN NNNCCCNTTT 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1596942 [Map]; Strand: w
      • AT5G05390.1 - [+] show detail - laccase 12
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-2841-1 - 3-prime edge 
    TCCGACACCA TTGTCGACCA AGAACGCCAT AGCAAGACCC CACTTTATAT 
    GAACATCTAA GTGACAATGC ATCAACCAAA CCCCTGTTTC AAAACCAAAA 
    CAACATTATT TTCCCTAATA TTAAATCATA TTTAACTATT TCTAAAGATA 
    TGATAAACCT TTGTTAATTA CCTGGATTAT CTGCCACGAA TCTGATAACA 
    GCCCATCCAT TAACAGGAAC AGCCACAGTG TTTCTAAGTG GAGGATCAAC 
    AAGATTAAAC TTAGAAGTAT CTTTCTTGGG ATTAAAGTTA CCGAACCCTT 
    CACCAACAAT GTAGAAATCG TAACCGTGAA GATGAATCGG GTGATTCTCC 
    GATGTAACAA TGTTTGTATC CTGTAAAACA ACTTGAACTC GAGATCCATA 
    CTTTA

AT5G05390.1

Model type
Protein coding
Short Description
laccase 12
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05400.1

Model type
Protein coding
Short Description
LRR and NB-ARC domains-containing disease resistance protein
Computational Description
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G63020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR