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53-2843-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26279073 [Map]; Strand: w
      • AT5G65685.2 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: -3154; Region: intergenic
      • AT5G65700.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -2638; Region: intergenic
    Flanking Genome Sequence: 53-2843-1 - 5-prime edge
    ATTAGTTGGA CCATGTTTTA TGTCCGTGAT GGTCGGACTC AGAAACAGAG 
    TGGTGATGTG AAGATGACAT GTTTATGGTC CCATTTTCAC TTTTATTGGG
    TCGTGTTTCA CCTTTCAAAT GAACCACTAG AAAATTGAAG CAACTTTTTT
    TTTTCA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26278951 [Map]; Strand: w
      • AT5G65685.2 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: -3032; Region: intergenic
      • AT5G65700.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: -2760; Region: intergenic
    Flanking Genome Sequence: 53-2843-1 - 3-prime edge
    AATTGATACA GTCAGTTCCC ATAACTTATC TCTCTCTACG AGTTACTCTT 
    ACTATGTATG ATCACTTTTT AAAACACTTT CAATACTTGC GAAACTGTAT
    TTTAAATATT GGGAAAACAG AGAGAATTAG AGAGGAAACA TGTTCTGAAC
    ATTATATTTA TTACCACTCG TAAGTCACTT TCCATTTGCA GGATTTACTT
    ATACCTAATG GTGTCAGATT GAGTTTGTGT CTCTTTTACA ACAGTATCGC
    ACCTTCTACA TCCAATAGAC AACTAATGAA AGCTAGAATC AATCAAAACA
    GATTTACACT AGAAAGAAAA GGATGATACC ACATTGAAAA ATTGATGAAT
    GTATGAACAG GATGGTAACA ATTTAACTTA GAATCGAAAT TTTGGTATGA
    AATCCTCTGA AGTCTGAAGA GTTTTAGGTT TAGTTGAAAA TTAGAGTACT
    GTAGTAGTTT GAGATCCTCT AGACGAAGCA GAAGGTTCCA TCAAATTCTA
    TTTGTTTCGC GGGCCAACCC GCAAGCCCGA TATTNTATGG ACATATGTAG
    AGTTCAAGCC CGCCCTGTGA TGATGCTTAT TGGG

AT5G65685.2

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1).
Link
InterPro Scan - TAIR

AT5G65700.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Computational Description
BARELY ANY MERISTEM 1 (BAM1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1).
Link
InterPro Scan - TAIR