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53-2847-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203206 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 269; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4483; Region: intergenic
    Flanking Genome Sequence: 53-2847-1 - 5-prime edge 
    GATGGATNGG ACANNTANTC ANTNCCGGAC GCTTGCTCGT GTCATAACAA 
    AGNACGCTTG GCTTTACACA TGAGANGATT GCAGCTGANA CCCNTGTTCA 
    CCAGCAGACC AATTNGGTAG ANTAANTTTG NTTTCTTAAA TTTGTGTCNC 
    ATAGAAGAAT CTNGCTAGAC ATGTCCGTTC TTCTGCNCTT TGCCTCAGGA 
    CAGGTTCNTA NCGTTTTCTC CCCAACAACA TNCTATTGTA CTACAACTNG 
    GTGGTANCAC TGTGGAAAAC CTTGCACAGG CTGCTAAGCT ACCANCCCGG 
    NCCGGCGANC NNGCNGGCAN CTATAAACAC AGAGTTATAA TCAGCAACGA 
    AGCCTAAATG AGTCCAAGAT GTTTGCAATG TTGCTTCCGT GAGATCTACG 
    CAAGAGACGG ATAANAGGCA TGAGCTTCTG CACCAAACCC CAAAACAGAT 
    CCATCCTAGA CATCTTGGTG AATCTCAGAG CCTTGACCAC CACGAAATTC 
    CCAAATTCAT TCCTCGCCAG CCTCATCAAC CTGTCTCCAT CGCAACCCAN 
    AAGCTCCACA ACCACCACAA CCATTGACTC CTNCACCTNC NAAAGCTACC 
    ANCCCGGGCC GNNGACCACN CGGNCCCNTN TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203268 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 331; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4421; Region: intergenic
    Flanking Genome Sequence: 53-2847-1 - 3-prime edge 
    TTCCCTTCCA TTCCATTGTA TGGCTGCCTT GTCACAAGCC CAAATTCCAT 
    AAGAATCTGA GCAATTAGTC TTGAAACCTT CCTACTAGAT CAATTATTCA 
    GGATAAAAGA CTTCATCAAA ATGTAATATA CAAATCACGA AGAGCATACA 
    GCTTATACTC AGATAACAAT CTTATCAAGA TAGATACAAA TGTCTCATAG 
    CCATCAGAAA TCTCTAGATA TCACAAACGG ATCTTCCTGC TAATGGTTCT 
    AGCAGAAACT TTTTCACATT AACGAAAAAT AACCAAACAA ACTAATGAAT 
    TCAATAAGTT AAAAACAAAT ATAAAAAATT GTAAACACAA GTCTTAATTA 
    AACATAGATA AAATCCATAT AAATCTGGAG CACACATAGT TTAATGTAGC 
    ACATAAGTGA TAAGTCTTGG GCTCTTGGCT AACATAAGAA GCCATATAAG 
    TCTACTAGCA CACATGACAC AATATAAAGT TTAAAAC

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR