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53-2853-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1954331 [Map]; Strand: w
      • AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -4542; Region: intergenic
      • AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 659; Region: intergenic
    Flanking Genome Sequence: 53-2853-1 - 5-prime edge 
    GGGAGCACAA TTATTACGTC CTGGATCAAC TATTTTATTA CATTATATCG 
    TGTTTGTAAC CGACATTGAT ATTTATAAAT AAGAATGTGG CAGTTAATTA 
    GGAATAACCA TCTTTTTTTT TGTCAAGGAA TAACCGAATC TATATNCAAA 
    TGAAATGAAA GAGCACAAAA ATTCCAAAAA GAAGCTTTGA TCCAAATAGT 
    TTTGGACATG GATGGCATCG TAACATCCCC CCAAGAATAT ACTCGATCAA 
    TTATNGGTCT CCTTGNGAAA TTTTGTTTTA TTTGCTCCNA AATATTGAGT 
    TTAGTTTGAN ATGGGGCCAA CGCGTCATTA ATCACTATTG AACTAAAATA 
    GAGGCATTAA TTAAGTAGTT ATAAACTCGT TGGAAACAGA AAAGTTTTAA 
    ATCCTCATGT TAAAAGNGAT GATTAAGAAG GAATAAAATA TGTAATCGGA 
    ACATAAAATG TGTNTAAACA AAAGAGGCAA AATAAACTTG TNGAGAANAT 
    TAACCATATG ATGGATGGAT ATACATAACC ANTATTCTAA NAATNGCGGG 
    TTTCTTAAAA ACCTTATNGG ATAAAACANA CANTCCAAGN CNNANGGGCC 
    NCGTTTTCCC GCGGNCNGGN CNTTGNNNNN NNTNANNNCN NATTTNNCCN 
    NNTGNNCCNA NNTNACNNNC TTCCNNAAGG GNNNNNNNNN CNNAANNTTT 
    TNAAGGGNNG GGNGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3106674 [Map]; Strand: c
      • AT3G10070.1 - [+] show detail - TBP-associated factor 12
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2853-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGAG GAAACAACGG 
    AGGAGGGACT CGGATTTGTG GAAGGCGTTG GTTGAATCTG TGTTAAAGTC 
    GATGGTTTCG AATCCGACGG CTGAGGAGGT GTTTCCGGTG GCTGAGACGC 
    CGTCGAGCTT TGCCGTGGCT GATCCATGAA AAGGTTGTGA ATGTGGAGGG 
    AATAGAGATA TTGATTGAGT ATATAGAAAT CTAATTAAAC CGAAATTGTC 
    GGTACGGTAT TAAACAAGTG AACCGAAACT GCAAAGCTCG ATAATTATTA 
    ATACCGGACC GGCTTTAACA ATTCCTTTTC TCTGTTGTGT GATTAAAACG 
    ATGAGTTTAA CCCCAAAGAA TAAATGAGAG TTAAAACGCA GCGTTTCATT 
    ATGCTCAGAT AGCAAGTTTC TTCTATTGCT GGAAATGTAG CTTCCAAGTT 
    AACTAGTGTC AAAGTCTCTG GTCTTTTTCT CACATACTCA AGAGTACACA 
    GCGATCAAAT TAGCTAGTGT CACGACAAAT TGGAGATTTG TTTGCAGCCT 
    TTAGAGCCTT ATAGCAAAGA AGAACTGGCA TTGATTTTGA TATATTTTGT 
    GGATTGGAGA AGATATTGTC AAATTTTCAA AGCT

AT3G06410.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06420.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10070.1

Model type
Protein coding
Short Description
TBP-associated factor 12
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
Computational Description
TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).
Link
InterPro Scan - TAIR