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53-2882-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23170359 [Map]; Strand: c
      • AT3G62650.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1172; Region: intergenic
      • AT3G62660.1 - [+] show detail - galacturonosyltransferase-like 7
        Distance: -2447; Region: intergenic
    Flanking Genome Sequence: 53-2882-1 - 5-prime edge 
    TAGTGAGGAG AAGTTATATA TACAGCTAGT TTTAAAAATC CACGGAATTG 
    TTGAGATGCA CACATTGGAT CTATTTATAT ATTATCGTGG GGGAACAGAA 
    TAATAAAGTC CACCTATTTA TTTGCATATG AAATTTCAGT GTAGCCTCCA 
    ACACTTGGTC ACACAATTCA TAACGATGGC TAATTTATTT AGGCAGGAAC 
    CACATGGAAA CTGTATAATT CGTTATGTTC ATTGCTTGCG TCATAAGTAA 
    TTAACCTAGT TATTATGAAG AGTTTAATAG CAAGTGTCCT TCATTTTATT 
    AATTTCTTCT AGAAATTATT AGCCAAATTT ATTGAGTCAG TACTAGATGT 
    GTAAATGATC GATAACAACA TCACACCTTA CTTATGTACT TTAGTTCTTA 
    AATATGATTT GATTATACAA AAAAACACTT TTACAATCCA AATTCAGGTT 
    TAAATGCATG TTCATAACTG AGGCTATTTT AAGGGAGAAA TAGCCACATT 
    TAAAACATTT AAGACATTTA GGCCCATTGT ATATTCGTAT GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23218742 [Map]; Strand: w
      • AT3G62760.1 - [+] show detail - Glutathione S-transferase family protein
        Distance: -496; Region: promoter
      • AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon4 (3UTR)
      • AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-2882-1 - 3-prime edge 
    ACTTCATTTG GTGTATAGTT TTGTGTATAT AATAATGATG GGTCGTCCTA 
    TAATTTGTAA AACCTTTTAT CACTAACCAA AACTGATTCA CGGCTCGTCA 
    ATTTGTCTCT TCGAAACAAC TTCACTAAAC TAATTGTGTA ATATCGATCA 
    GTCAACNTTT ATTTAGTTTG GCCACGTGTA CTGAATGCCT CGTGCACACA 
    AATTAATTAG ATATTAACGA TGGCAGATGA ATCTCGTAAA CCAGAGTTTC 
    GAGGCACGAG AAAAAGGAAT CCTATAAATT TCAGTGACCT CAAAATAACC 
    AATTTCTGAA ATAATGTGTA TAAAACTGGA AAGATTCGAG TACGTACATA 
    ACCTAATGTT AGGTTTGATA TTTCAGTACA TAGTTATTAA AAGTCCAAGA 
    AACAGGACCA CATACATACT GGCTAGGTTT TACGAAATTC AAAGCATATG 
    TCATATATAT ATATATATAG AAGCAAA

AT3G62650.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 57 Blast hits to 57 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62660.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 7
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 7 (GATL7); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 5 (TAIR:AT1G02720.2); Has 1817 Blast hits to 1811 proteins in 371 species: Archae - 0; Bacteria - 732; Metazoa - 289; Fungi - 4; Plants - 732; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62760.1

Model type
Protein coding
Short Description
Glutathione S-transferase family protein
Curator Summary
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 15143 Blast hits to 15132 proteins in 1449 species: Archae - 0; Bacteria - 8090; Metazoa - 2263; Fungi - 919; Plants - 1235; Viruses - 0; Other Eukaryotes - 2636 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62770.3

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 213 Blast hits to 211 proteins in 57 species: Archae - 0; Bacteria - 30; Metazoa - 48; Fungi - 45; Plants - 63; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR