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53-2897-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23998866 [Map]; Strand: c
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2897-1 - 5-prime edge 
    CCCGTGTGCA GATTCGAGCT ACCTTCAGAG CCTAATCGAC GGAGCAACAA 
    CAACGAGGAG GATAACGCCG TGGGGATGAC GATTTGGAGA CTTCCCGGTG 
    GTGGATTCGC CGTAGGGAGG TTTAACGCAG CAATGAGAGA CGGAGAGAGA 
    GTTTTGCCAG TGGTGTTAAC AGAAATGGAT GGTGGTGGGA TTGGTAATAG 
    CCAGGATGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23998987 [Map]; Strand: c
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2897-1 - 3-prime edge 
    GGGACAAGAG TTTCGAATCG ATAGCCACGG TACGATGCAA TCGTCGTGGA 
    AAAGGTGTTT ACACGGCATC TCACGCGCCT CCGTCTCCGT CTCGAAAATC 
    TCCGTGCAAA CAGCGCAATT AGCCTCCGAG CCTATGTGGC AATCCGAGAT 
    TTCGACTCTA GGTAAAGACT CAATCGCCGA TTTAGACGCC GGAGGGTTTC 
    CAGATCTACC AATTCCAGTA GCCGACGCTT CGATTTGGCT TAGCTGTTCA 
    AGTAACCGCT CGAATCCAGA TCCCATCAAG ATCTCAGATA CAGAATCCGG 
    AAGCGGTCTA AGACCCGATC CGGATCCGTC ATCGTAATAA AACTCAAAAG 
    CGCGTCGATC TCTAGCCGCA TCTCCTTCTT CTCCTT

AT5G59550.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR