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53-2903-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24207550 [Map]; Strand: c
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -139; Region: promoter
      • AT5G60120.1 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -236; Region: promoter
    Flanking Genome Sequence: 53-2903-1 - 5-prime edge 
    GATGATGCTG ACTGTATAAC TTTTGGTATT AGAATACTCA TTGTTTAAAT 
    TTATAATTAG TGCTTTTACA GTTTTACTAT GATAAATTTA CGGTTTAAAC 
    TGTATGTGTT AAGCTTTTCT GTGATTTCTT TACCAAGATA AGTTATTAAA 
    TACAGTATTA GTACTAAATA GATCTGTTAA GGCCTAGGGA CAATGAGGTG 
    CATTTTGTTC ATGGAATGAG GATTAAATGG ATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000054 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 5320; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 1258; Region: intergenic
    Flanking Genome Sequence: 53-2903-1 - 3-prime edge 
    ACACCAAAAG TTAGGCCCGA ATAGTTTGAA ATTAGAAAGC TCGCAATTGA 
    GGTCTCCAAT ACGCAAACCG CCTCTCCCCG CGCGTTGGCC GATTCATTAA 
    TGCAGCTGGC ACGACAGGTT TCCCGACTGG AAAGCGGGCA GTGAGCGCAA 
    CGCAATTAAT GTGAGTTAGC TCACTCATTA GGCACCCCAG GCTTTACACT 
    TTATGCTTCC GGCTCGTATG TTGTGTGGAA TTGTGAGCGG ATAACAATTT 
    CACACAGGAA ACAGCTATGA CATGATTACG AATTCGAGCT CGGTACCCGG 
    GGATCCTCTA GATATTGTTT TTGTTTCACA TAAATGTCGT TTTGGATTAT 
    TCATGTAATA TTTTAAACTA AAGTACAATT TTTGACTACT TTAGTTTACT 
    AGTTAAGCTT TTATTTTTTT GACTAACCAT TGAATGATGA AGAGAT

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.1

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.1); Has 5042 Blast hits to 4634 proteins in 238 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 4961; Viruses - 7; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR