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53-2909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 224084 [Map]; Strand: c
      • AT5G01580.1 - [+] show detail - gamma interferon responsive lysosomal thiol (GILT) reductase family protein
        Distance: -232; Region: promoter
      • AT5G01590.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -90; Region: promoter
    Flanking Genome Sequence: 53-2909-1 - 5-prime edge 
    CCAGGTGGAT TAGATGTGGA AGACGAAGTG TGACTGACCC AACCCAGCGA 
    TTAAACATCA TGTCGTTTTG ATATTCCGAA AACTAACTAC GTGCCGTTTT 
    CAGTTAAATC AAACAACGCC GCAACAATTG TTTCAACGCC AAAACGCCCA 
    AGATGCCTTT AAACAATAAT AAAGCATCAA CGAATCACTG GAAGTAATAA 
    GAAACAGTTT TATGTCTTAC TTTCCTTGTT TAATGAGACA CAAGAATAAA 
    GCAAGAGTCA AAAACAATTC TCTGCAATCT TCCTCTTCTT CTTGTTTCCA 
    CCAATGGCAT CATGTCAGAG GCTTTGCATC ACAAGTTGCA CAATCTTCTT 
    CTGCTTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 224152 [Map]; Strand: c
      • AT5G01580.1 - [+] show detail - gamma interferon responsive lysosomal thiol (GILT) reductase family protein
        Distance: -300; Region: promoter
      • AT5G01590.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -22; Region: promoter
    Flanking Genome Sequence: 53-2909-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
    ACCTGAGCTT ACTGAGTCGG AACAACATCA GCCAATAAAG CCCTGAACCC 
    TAATTTTCTT TTGGCTTTGG CTGGAGAACG ACTGTATGTG TGTTCAACAA 
    TGTCGTCGAT GAACTTCAAT CCATTTCAAA ACTGGTTCGA GAAACCACCG 
    AACCCAGTCC CGTCCATCAA CTTCGTCTCG CTCGCTGATT CCTTCTTTCC 
    CAAGTCGCAG TCTCCGAATT TCGCTTCGAT TGGACTTCCA AAATTCTCAA 
    AGAAGTCCCC AAAACCCGAA ACAGCAGGAA CCGACGAACC AGGACCGTAC 
    AAGCAAATAG CAGAGCAGTT CTTATGGGAG TGTGAGAACA TACCGGATTA 
    CAGGCACACT CCAGAAGTGG ATAAGCTACC ANN

AT5G01580.1

Model type
Protein coding
Short Description
gamma interferon responsive lysosomal thiol (GILT) reductase family protein
Curator Summary
thiol reductase in OAS metabolism
Computational Description
OAS HIGH ACCUMULATION 1 (OSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G07080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01590.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR