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53-2911-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1879130 [Map]; Strand: w
      • AT1G06148.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -1602; Region: intergenic
      • AT1G06160.1 - [+] show detail - octadecanoid-responsive Arabidopsis AP2/ERF 59
        Distance: -3874; Region: intergenic
    Flanking Genome Sequence: 53-2911-1 - 5-prime edge 
    GTTGAGATTA ATTAAAGTGT TGCTGGTTTT AGAAAGATCA ACTTTTTCCA 
    ATCCAAAATA AAATAAAACT AAAACAGATT CGGTAAAAAA AGAAAGAAAG 
    TAATTCATCG AAGCCAAAAG ATGTCAATAT GTAGACTCCA AAAAAAAANC 
    TAATATTTTA CATTAATTAT TNGAAATATC CATCAATCGT TTTCCCTTTA 
    NCANGTNGAN CCNTTNTTAT NTAATNCTAT NCCANCTACT ANAGTNGCTG 
    GAATTTACTA ATTTCCCAAA CAAAATATTN ACTCTTTTTA TTATTCATAA 
    NGAGNGGGGG CATTGAATAN CATGCNTGTC TGAGTTTTNT NGGNCGCNCG 
    GAAAAAATAA AAAAGTTTTT GACCTACAAT TTTTGTNCTA CCAAACAACN 
    GGGCTTACCT TTGACCCTAN CAAACTAGGA GGCTNGANCA AATAGNGAAA 
    TTCCAAAGAT TAAAACCAAN TAAAANGATA AGAGNGNGCN TGCNCCCGTN 
    TTTTTTGCNC TACAGGTTNT TATTGTNTTC TCAAGTTGCN CGATACAAGC 
    CAATTATGTT TCAATGGTCC ACCACTAATA GGCTCATCCC ACTAAATTAG 
    ATTTTTTAAA ATCANAATCT TTATATAACC ACTTTATTAG TTNGGTATAT 
    CCTCTTAAAC TTTNGCTAAT TATCTTCCTA AANGTTTCTA TTTTTTATAC 
    ATACGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1879014 [Map]; Strand: w
      • AT1G06148.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -1486; Region: intergenic
      • AT1G06160.1 - [+] show detail - octadecanoid-responsive Arabidopsis AP2/ERF 59
        Distance: -3990; Region: intergenic
    Flanking Genome Sequence: 53-2911-1 - 3-prime edge 
    ATCTCAACAA ACTTAGGAGA GCATGCATCT TTCTATATGT TCCAAAATCT 
    ACACTTTCAA ATGTATTTTT CTTATATACG TAACTGATTT AGCAGTATAA 
    AATAAAAAGT ACTGCTATTT TATTTTGAGC CATCGACNTT TCTACGCTAA 
    AAAAACGTAT TTAATTTCTT ACCAGATAGA GTATCAAATA GAAACTTGAC 
    ACAGCAGACA AATAAGTTTA TTTATGGACA AAATATAGAA TCTTCTCAAC 
    ATGCTGGACT TTTATCCGTC ATTGGAAAGC AAGAAAGTGC ATGCATCTTC 
    AATTTAAGCA CGTGTCTAAT TATTTGGGCA TGATTAAGTC GCCACACACG 
    ATAAAAATTG AAAGCTTGTT TCTTCTTTTA TTTGCCCCTT CGTATATGAG 
    TGGAAAGTAT GCATTAACAA AGATATGTAT TATATAAAAT AGCCACATAT 
    ATATGTACTG AAACTGACAT AACGAAATTT AACAGATATA TATTGATAAT 
    AACAATATTG TCTCTCTTCA ACTGTCTCCG TTCAT

AT1G06148.1

Model type
Protein coding
Curator Summary
Unknown gene
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06160.1

Model type
Protein coding
Short Description
octadecanoid-responsive Arabidopsis AP2/ERF 59
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational Description
octadecanoid-responsive Arabidopsis AP2/ERF 59 (ORA59); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1); Has 6527 Blast hits to 6261 proteins in 388 species: Archae - 0; Bacteria - 36; Metazoa - 435; Fungi - 42; Plants - 5810; Viruses - 4; Other Eukaryotes - 200 (source: NCBI BLink).
Link
InterPro Scan - TAIR