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53-2922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11820040 [Map]; Strand: w
      • AT4G22410.1 - [+] show detail - Ubiquitin C-terminal hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2922-1 - 5-prime edge 
    ATGTAAACGT GGTGTCCTGC TTCTAAGCTA TGCGTATAAG CATGAGACTT 
    CTGGCTTCTT CCTTGGAAGT ACTTTCCACA AACAAGGCAT GCATATACAT 
    TCAGATTGGA CAAGGACACA GAGCAAAACC TCTCAAAATG AAAATCCAAC 
    ACCTGAAATT CAACCATAAG ATATGAGTTT AAACGCTAAT CTGATAGANA 
    TGGACTCAAC GGATACTAAG AACAAGAGTA AAAACAGAGT AAACTAATTC 
    TATTGCGCCG TTTTTGACGG AGAACAAGAT GAGAAGAGAA TTAATAACTT 
    TAATGTTATA AGTTTTGATG ATTGTTTTTG GTAAGGTTGC CCTAAAGAGG 
    CAAAGACCTT TAAATACAAC TCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11819923 [Map]; Strand: w
      • AT4G22410.1 - [+] show detail - Ubiquitin C-terminal hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2922-1 - 3-prime edge 
    TTTACATCAA TCTTCTGACA GAGAAGGTTT ATTGTCTTCC TGATAGTTAC 
    GAGATCAATG ACCCTTCTTT GGATGACATT CGCCATGTTT TAAACCCAAG 
    GTATATTAGA TCTTGTGACT AACTACATCA TAGTTCTTAC NTGCATTTTG 
    GGTATTGATT TGTGAACATG TGAGCCTTTG CACGTAGTTA AAAACAACAA 
    AATTGCTTTG ACTATAATCT CAATCAGTTT CTTCTTGCTA GTTCTCTGTA 
    TCATCTACCA TCTATTTATA TTTTTTCATC TCACCTCGAC

AT4G22410.1

Model type
Protein coding
Short Description
Ubiquitin C-terminal hydrolases superfamily protein
Computational Description
Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22285.1); Has 1861 Blast hits to 1844 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 1101; Fungi - 318; Plants - 235; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Link
InterPro Scan - TAIR