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53-2928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20698711 [Map]; Strand: w
      • AT5G50860.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1672; Region: intergenic
      • AT5G50870.2 - [+] show detail - ubiquitin-conjugating enzyme 27
        Distance: 722; Region: intergenic
    Flanking Genome Sequence: 53-2928-1 - 5-prime edge 
    CNTGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATTCC TCTCTCAAGC CTTTTAAAAA ATAATATTTT TCATGTGTGA 
    AAAATGAAGC CAAAAAAGTT GTTAGAAAAA ATGTCAAAAG AAAATCATTA 
    ACTTTCAAAT TTCAGACGAT CGAATCATGA ATTACGAGGA ACACAAATAA 
    ATCGTAAAAT ATTGGTTGAC TTTAAGTTTA GATAACAAGT TTGGTTGACC 
    AACTAAATTA GACATGACGT TTAGTATACT AACAGAAAAC CTTTAAAGTG 
    TTAAATTCCC GTTAGTTATC TATGTTATGG CTAAACGGCA TAAGTTTATT 
    GTACACTAAA CAACATCGTT TTGTCAATTG AAAAGAGACA AAATCCCCAA 
    ATCAAAACTT GATTAGCTTT TAGTGAGATT TCAAAATAAG ATTACAACTT 
    AATAACGATT ACTTGCACTT TTGGGAAAAA GAATT

AT5G50860.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54610.3); Has 127216 Blast hits to 125539 proteins in 4407 species: Archae - 96; Bacteria - 14251; Metazoa - 47558; Fungi - 13008; Plants - 31428; Viruses - 439; Other Eukaryotes - 20436 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50870.2

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 27
Computational Description
ubiquitin-conjugating enzyme 27 (UBC27); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4).
Link
InterPro Scan - TAIR