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53-2936-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23495716 [Map]; Strand: c
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-2936-1 - 5-prime edge 
    CTCTCAGCAA GTACCACCGC CAGGACTACT TTCATGTCCC GAGCCACCAG 
    CGTTCCTGAG ATCCAGCCTA CCAACGGAAT CTTCTCTTTT GATCTTACAT 
    GGGCCGAGAT CCAGTCTGTG AAGCGTAAGA AACTGATTTC TTTTCTATAG 
    ATTTCTTAAA CTATCTTATT CTCAACTAAG TCACTGAGCA TTGGGATATC 
    TTTGTCTTCA GCACAAATAG AAAACCCCTT CACTGCCACG GGCTTCCAGA 
    GAAACCCCGC AAACAAGAAC GCCGGGAAGT TCACGACTCT TGCGGACTTC 
    CTTGAGCTCG GCAAAGCAAA GGCAGTCACC GGAGTTTTAA TCAACATTCA 
    GGCAAGCCAT TTAACTTCCA AATGCTCCTT GACTAACACA AGGAAGCTCC 
    ACTAACACTG TTTTTGTTGA CAGAATGCTG CTTATTTAGC CTCGAAGAAA 
    GGCTTAGGAG TCGTAGACGT AGTCAAGTCT GCTCTTACAA ATTCCACACT 
    CGACAAGCAA TCAACCCAGA AGGTTTTGAT TCAGTCGGAT GACAGTTCAG 
    TTCTATCTAG TTTCGAGGCT GTCCCTCCTT ACACAAGAGT CTTGAGTATC 
    GACAAGGAGA TCGGAGATGC TCCTAAGACA TNCATCGAAG AAATCAAGAA 
    GCATGCAGAT GCTGTCAATC TCTTGAGAAC TTNCCTCATC ACCGTCTNCC 
    AAAGCTNCCA TGCCGGACCG NCGACCCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23495832 [Map]; Strand: c
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-2936-1 - 3-prime edge 
    GCTGAGAGGT CTGCANCATN ATGGNANAAA GCGATTCCNN CTTTGGACAT 
    CNNAACAGAG CANNCAATTA TGTCTGCTCC ATCGNCNATN GCTTTCTGGT 
    AAGCCACCAT NACCGCAGNC TGGATAGNCT CCGCATTGCT CCATTGTGAG 
    TTATAACCAA TGCATGCCCT GCTTTGGGGA GATTGCCGTT TTGGTGAGAA 
    AAGCAAGCTG CAAGAAAACA GACGCTTTAG CTTCTTCTTA ATAATCAGCT 
    ATCTGAGGAA ACATATATAG CAAGTCATCT CACTGATTGA TTGTGATGCT 
    GTTGGCGGGA AATCGGTGAT GACACCATCA ACAGAGAACT GGCCATTGTC 
    CACAAACTGG AGATACTCAG CAGAGGGATC ATAGCTGTAG TTAAAGCTGG 
    TGCGCAAGTC GTTGGCAAAC CCTGAAGCAT AGACCTCTAG ACCGGCTTTG 
    TGAGCATCAG CCACAAAAGT GGTGGCGGGC TTAAGGTACT TAGCTGAGTC 
    AATGGGCCAA ATGTAGTCTT TGGGCACAAG AACGCCTGAA GCAAAGGCCT 
    TGATGGCTGC GAGGTTCTGC TGAATCTCGC TGTACTTCTT GTTGGTGGTG 
    GGCTCAACTG CCTCGGGGTC TTTGAACTCA AATATGAGCT TTGTCTTGGC 
    CCTGCCCGCG TNCATCCCGA TGCTCTTCAA GAAACCAATC TCTGGAGATG 
    AGATGACATT AATGCCGCGG AATCGCAAGC T

AT5G58050.1

Model type
Protein coding
Short Description
SHV3-like 4
Computational Description
SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR