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53-2938-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24216511 [Map]; Strand: c
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-2938-1 - 5-prime edge 
    TNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTA GAAATGTGAA GAAAGTCTCA TGTCTTTTTG 
    CATTTTCATT AAAATAATGT ACCACTTCTG TTTTATGATG TTATCTTTGT 
    AATGCAGCTG CGCATACCAA CTAAGGTCAT AACGAAGTAT GGCCTTACAC 
    NTTCCCTGAG TTCATCAATT TGATTGATCC ACTCGAGAAA AACTTTGGTA 
    AATTGAAGAG GAAAGTTAAG GGTCAAACAA TCAAGGGATT CCGTAGTATA 
    ATCAGAAGGA ATAATGTGAA GTTGAATGAC AAGGTGATTT GTGAGTTAGA 
    AAAGGAGATG GATGGTCTTG TTCGAGAAAT CAAGGTCCAT GTTATAAGAG 
    GATGATCTCT TGATAAGGCT TTATGCGTTA ACTCCAAGAC ATTATCTATT 
    TTTACTTGAG AGTTTTTATA TGAGTAGAGT ACTTGGTTTT ATGAATCTTA 
    TTGGTTTTCT CGGAACATAA TCGATGTTGA TGCTTTCTAT ACACTTCTTG 
    ATTTTGTTTG TTTGTCTGAA ACATGAAGTG CAAAAGACGA TCAACACAGT 
    CTTACAATAA TAATGTATAC TAGAGCTATA GATTTTGGGA GAAATCATTA 
    TGAATGGTTC ACACATCAGG GCTGTTTAAA ACCTGCGAGT TCATATAAAA 
    AGAATGTTAT GACTCTCTAT GTGATCATAA GAAAAGCATT GGCATAGGAG 
    GAGAATAATA CTAAGATACT TGGAACTCTG NCACTTAACA CTAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24216563 [Map]; Strand: c
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2938-1 - 3-prime edge 
    TCTTACCATA TTATATTTTA TTTGCCGATG TTGGTTCACT GTAAAGAAAG 
    GGTTCATGTG ATTATCCAGA TATTGTCTGT CATGCTCTCC AGAAGAACCT 
    ATCAAAATTT ATACGCAAGA AAATAAAAAG ACAGTGATGC TCTCAGTCTC 
    AGTTAACNTT CACAAGACAA AAGTTTCTAT TATACCTTTC TTTTTTTTCT 
    CTGTTTTGAC CCCTCTCCAT CTTTCTTTCT CAACATCAGC ATGATCATCG 
    TCACCATAAT CTTGATCATC ATCATCATCA TCATCATCAT CATCATCATC 
    ATCATCAATA ACTATGATAT CTNCACTAGA TGTATCTTCC TCAACATAAT 
    CTTGAACATC ATTAATATCA TCATTATCAG CATCATCA

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR