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53-2942-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23264186 [Map]; Strand: c
      • AT1G62820.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2942-1 - 5-prime edge 
    GGGTTTGAGC AACGACCAAG TCTCATCAAT GAAGGAAGCA TTTATGCTCT 
    TCGACACAGA CGGCGACGGC AAAATCGCAC CGTCGGAGCT CGGAATCTTA 
    ATGCGTTCAC TCGGCGGCAA TCCAACAGAA TCACAACTCA AATCAATCAT 
    CGCGACGGAT AATCTCTCGT CTGCGTTCGA TTTCAATCGA TTCCTAGATC 
    TAATGGCGAA ACATCTGAAA ACAGAGCCGT TCGATCGCCA GCTTCGTGAT 
    GCGTTCAAAG TGCTTGACAA GGAAGGTACT GGATTCGTTG CTGTGGCAGA 
    TCTGAGACAT ATTCTTACGA GTATCGGTGA GAAATTGCAG CCGAGTGAGT 
    TTGATGAGTG GATCAAAGAG GTTGATGTTG GATCTGATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23264260 [Map]; Strand: c
      • AT1G62820.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2942-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TCCTTGCTCA TCTTCGATTC GGTTCTTTCG GGTTTTCGAA TTCGGGTCGG 
    ATCTCTTGTG GAGAATTCAA TCAAATCCTC TTTGTTCTTG ACGACGACTG 
    TGTAGCAGTT TTTTTTTGTT AATTTGGANA GAGGGAGAAA GAGAGAAACG 
    ACAATACNGT CGTCGTTGTA TAGTGCTTAA AGATCAATGG TCCAATTATA 
    TGGGCTTAGG AAGCCCATGT GAANATTAAT CTTTCAATTT TAATAAGATA 
    AAACAAAAGT AAACTTCACT TCACGTCAAA TAACAATTTG TTTTCCAAAA 
    TGTTTTGCGT TAAGTACAAA AAAGATTANA ACAGCAATTT ACAACGTANA 
    CNCAGTTGAA TACAATTCAA TCTAAAACTA TTTTACTACT AATCAAANAT 
    C

AT1G62820.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).
Link
InterPro Scan - TAIR