Home
Mutant Lines
53-2943-1

53-2943-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 26253427 [Map]; Strand: c
- AT1G69770.1 - [+] show detail - chromomethylase 3
  Distance: 0; Region: exon1 (CDS)

CCTGCGACAA AGGATGACAC TACCAAATCC ATTCCCAAAC CGAAGAAGAG 
AGCTCCTAAG CGAGCTAAGA CGGTGAAAGA AGAGCCGGTA ACAGTGGTCG 
AGGAAGGGGA AAAGCATGTT GCGAGGTTTC TAGACGAACC AATTCCAGAA 
TCTGAAGCGA AGAGTACCTG GCCCGACAGA TACAAACCGA TTGAGGTAAT 
TTCATACATC GGAAACTGGA ATTTTGGGTG TTTGTCGATG AAATGGTTAG 
ATCTAGTTGA AATTTGCTTA GATTTGTTGC AGATCTGTTG ATTTCTGAAG 
GATTTTTTGT TTGTTTTGTT TCAGGTACAG CCACCTAAGG CTTCGTCAAG 
AAAGAAGACG AAGTAAGTTC CTTGAATCCT TTGGTTCTTG TGTATAGTCA 
GATTGAGAGG CTTTACTTTT GATTTTGATT AAGTGAATT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 23264309 [Map]; Strand: c
  - AT1G62820.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 53-2943-1 - 3-prime edge
```
ATCCTTGCTC ATCTTCGATT CGGTTCTTTC GGGTTTTCGA ATTCGAGTCG 
GATCTCTTGT GGAGAATTCA ATCAAATCCT CTCTTGTTCT TGACGACGAC 
TGTGTAGCAG TTTTTTTTTG TTAATTTGGA GAGAGGGAGA A
```

AT1G62820.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G69770.1

Model type: Protein coding
Short Description: chromomethylase 3
Curator Summary: Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description: chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link: InterPro Scan - TAIR