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Mutant Lines
53-2947-1

53-2947-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 22819642 [Map]; Strand: w
- AT5G56340.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (3UTR)

CATAGAAATG ATGTTCTTTC ACTCAGACTG TTGAAAAACA AATATCCATT 
GTTGGTGTAC AGAGATGATC AAATTTCAGT TTCCATTGTT TTAGTTTTCA 
AGTATGAAAT TATCTGTCAA TCGAGTCCAA ATAATGACGA AATATATACA 
ATGATTCAAT CTTTCATGTT TTTGTACAGA GATGATCAAA TTATGTGTGT 
CCATTATCTT TGTTTTTAAA TATGAAAATT ATATTTTCAG ATGAATCCCA 
AATAATGATG GGAATTTTAC AAAAATGGAG ATAATGATGA GTCTTTGTCG 
GAATGATTTT TGTATGGGAC GATTCATGCG CTGTCTT

3 prime edge [+] show sequence

Chromosome: 5; Position: 22819526 [Map]; Strand: w
- AT5G56340.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (3UTR)

TTTCTATGTA CATTAAAGCA GAGAATGAAA TGCAGAGGAA ATAACAAGTT 
CAATAGCTAG AAAAATGAGA GAACAACAAA AGATGAAGAA CAATAACAAA 
ATCCAAGATG TTTTAGTTTT TGATTGTTTT GCTCTCAGCG AGAAGAACCA 
GAAGATCTTG AGAAGAAATT GTTCTCACCA GATTGAGATC CAGAGGTTGA 
AGAAGACGAA GAAGAAGAAG ACGAGAACAA TCCACTAAAC GGCCATGGAA 
ACGAAAACCG TCTCCCATTT CCACTCCTCA CCTCATCCTC TCTTCCTCTA 
TCCGCATTTG CCAC

AT5G56340.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: ATCRT1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR