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53-2953-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18008043 [Map]; Strand: c
      • AT4G38495.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38500.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2953-1 - 5-prime edge 
    GAGGACACCG TATAAGAAAG AAGCCTTCGT CGTCGTCGTT CTCCTCGTCG 
    GAATTAATAA GGTTTTTTTT TCCAGAGAGA GAGAGAGAGA TGGAGAGAGA 
    GTTGATGGNG GCAGATATAG NGGNGGCGTC GCGATTGAGC TTTAANAANA 
    AGCANGCCTA CNAAAAGTNC CCAAAAGCAC AATCAAGCAG CANANGGNGG 
    AAACACCTCA AGCAGATTCT TCAAGCTGAN AACTTCCCAN ATNTTCCTCC 
    CGACCTCCCC ACTTGNAACT CTTTTCTCTC TCTCTGATTT CTGATTTTGA 
    ANGGATTTTT GACTCTGTTT GAATCAAAAA TNAAATCTTN TTTGTGCCTC 
    GCAGATGTTA ACATTGAATC GCCTCCTTCC ACTCAACCAT GCAAGANACT 
    TTGCGATATT ACTGGATATG AGGTTTTATT CTGTTTTTGA GTGATCGATT 
    CTTTTCTACA AATTTATTCA CTACCCAAAA ACAACAAAAC TCANTGAGCT 
    TCTCTAATCC CTCGCAGGCA CCTTATGTGG ACCCAAGAAC AAACCTCCGC 
    TATGCTAATG CTCATGTTTT CCAGACTGNG AGATCACTTT CTTCCGACCA 
    AGTCCACCAG TATCTCTCCA TTCGCAATGC TGCTGTTGTT CTCAAGTAGC 
    ACCTAGCATN ATCTTATTCT NTTACTTGGA AACCAACAAC ATGTNGAATC 
    CTTCCTTATT ATTTATGGGG GGATTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18008159 [Map]; Strand: c
      • AT4G38495.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has...
        Distance: -88; Region: promoter
      • AT4G38500.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2953-1 - 3-prime edge 
    GTGTCCTCTT AAAAATCAAA CCGGTCCGGT ACGGTAGTGG AATGAACAAT 
    TTAGTAAACC GATAGCAGTG TTTACATTGG AAACCGAATT GAATGAAGTG 
    AAGCTGTTTC TTTCTAGATC CCCCAAAGCG AGTTCATCAT CTTCTTCGCC 
    TGGATTCGAT CAAGACTAGC ACTTTCATCA GATTTGATTA CAATCTCTCT 
    TATCTTCCAA GTTATAATCA TAATATCCGA GCAATTTGGG ATCTGGGTCT 
    TTCCTCTACA TTCAATTTCT TAATAAAGCT GGCCTCTTTC TTCCGAGATG 
    GTTCTTGAGC GATGATGAGT GACTCTCAGC GATCACTTTC TGTGCGATTG 
    AGCCGCCGGG GTGAGAGAAG CAATCATTAC TCACAATCTA AAGGTCTCAA 
    CCCAACTCTT TTTGAACTAA TGATCATCAC TTTCTTTTAG GTATAGTGGT 
    TTACACATGA AAATTTGAAG ATGACCCCCG TTATAGTGTT TTGTTTCCAC 
    TATAGAAGAA TCTAATGCGT AATGAATGAT TATGTCTTCG TAATGAATCC 
    CTAATGGATT CTATTACTTT GTCTCCAATG ATGCAGATGC TGTGGCTGGC 
    TTCTTCTCTC CCACCAGATT GCATGCTGAT TACACTTTGA AAAAAATTTG 
    GAAGGCAGGC TTCCTTCGCT TGCTTCTTGT TGGCGGCATT GTCTGGATGC 
    TACTCATTCT ATTTGCCCTC TTGTTCATGT TTGGTCCTG

AT4G38495.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF616)
Computational Description
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR