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53-2953-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18008116 [Map]; Strand: c
      • AT4G38495.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has...
        Distance: -45; Region: promoter
      • AT4G38500.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2953-3 - 5-prime edge 
    CTNTTAAANN CAANCAAAAT CGGTTATTCG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CTGGAGGACA CCGTATAAGA AAGAAGCCTT 
    CGTCGNCGTC GNTCTCCTCG NCGGAATTAA TAAGGTTTTT TTTTCCNGAG 
    AGAGAGAGAG AGATGGAGAG AGANNTTGTC NTNNTTNNTG ACNCGCNNCA 
    NTGACGNGGT GTNTTCGTCN TCCTCTATCN AANCANNNAN TTNNNTNNNG 
    NCNNTTNTNN GTGNNNNGCT CTCANCNNNA TNGTNTTTNT CNTTCCCCCT 
    NTTNTNTNAC CNTCCATTGN GTNGNCTNTN TTNNGNTGNN NTCCCGATAT 
    TANNACACCG ANNACANGCN ANCNNGNNGN NCANCNCCCN CNANAAANNN 
    TGTNNGNTNN TCCTCCNNTC NNTTTANNNT TTCCCGTCNN TATTNCCGCC 
    NNTTNNNTTC CTCCGNGCTA NAANCNNTCA NNANTTANNC TCNANGTNTA 
    ACCNTNNNCN CNTNNCCATC CNACNCNCNC NNNNCANNTA TCAGGGNGGC 
    NGGAACNAAA NNNNNTATNA NCATACAATA TCNTNGTNNT TNNTATNNNN 
    GCAAACANTN ANNNCNTNNC NNTCATNGNG TTTNCNGNCG TATATTANCC 
    AGTGNNAANT TCTNACTTTG GTTTNTNTTN TTGTGCNNTN GTNCNNCCGA 
    AGNNANNAAN NAANNNCNNT NNATATTNAN GAGCGCGAAN TTATANTCGT 
    TAAAANNNTN TANCAGCNCC TNCTNGNNCT NNTCTTCNTN NACNANNTNT 
    ATCNTTGATT NNNGTTTCGN NNCNTCNTNN ATTNNTTCNN CGTNTTNATG 
    CGGTNTTNCG NGNATTNNGG GTATTCNTCN GANNTNTTTT NNNNATNNNT 
    NCNTATTNNG NATNTAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18008159 [Map]; Strand: c
      • AT4G38495.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has...
        Distance: -88; Region: promoter
      • AT4G38500.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2953-3 - 3-prime edge 
    GTGTCCTCTT AAAAATCAAA CCGGTCCGGT ACGGTAGTGG AATGAACAAT 
    TTAGTAAACC GATAGCAGTG TTTACATTGG AAACCGAATT GAATGAAGTG 
    AAGCTGTTTC TTTCTAGATC CCCCAAAGCG AGTTCATCAT CTTCTTCGCC 
    TGGATTCGAT CAAGACTAGC ACTTTCATCA GATTTGATTA CAATCTCTCT 
    TATCTTCCAA GTTATAATCA TAATATCCGA GCAATTTGGG ATCTGGGTCT 
    TTCCTCTACA TTCAATTTCT TAATAAAGCT GGCCTCTTTC TTCCGAGATG 
    GTTCTTGAGC GATGATGAGT GACTCTCAGC GATCACTTTC TGTGCGATTG 
    AGCCGCCGGG GTGAGAGAAG CAATCATTAC TCACAATCTA AAGGTCTCAA 
    CCCAACTCTT TTTGAACTAA TGATCATCAC TTTCTTTTAG GTATAGTGGT 
    TTACACATGA AAATTTGAAG ATGACCCCCG TTATAGTGTT TTGTTTCCAC 
    TATAGAAGAA TCTAATGCGT AATGAATGAT TATGTCTTCG TAATGAATCC 
    CTAATGGATT CTATTACTTT

AT4G38495.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF616)
Computational Description
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR