1. Home
  2. Mutant Lines
  3. 53-2961-1

53-2961-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91910 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2961-1 - 5-prime edge
    CTCCCAACAA TATCACCGTC GGTGTACGAC CTCTCCTCCA TCTTCGAGCC 
    GGTCATGTCC TCCACTTGGG CCATGCAGCA ACAACCACGA CCGTCTGATC
    ATCTCTTCGG CGTCCCGTCA TCGTCCAATA TGGGCGGAGG CCGGTGAGCT
    CCAAGCACTG GCGCGTGAGT TTATTCACGG TGGGCAAATG CCAGCTCAGC
    CATCGCCGGG AACCAGTGGT TCTGCCTCGT CAGTGATAAA ACGAGAATGA
    AGTTATTTTT ATCGTATGTT TGTTTATTTG GACCGTAAGA GATCTATAGT
    TAGCCATATG TTTCTCCTTG TAATATATAT ACTTGGTCGA ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91801 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2961-1 - 3-prime edge
    CTGGGGTANG TGCGCTACGG AATGNGTGTG TTAANNANAN NNTNGAAGAC 
    TACCAGNACC GGGCCGTGGT ACNACGCTGT GCNCATATNC TAGAGTTGCT
    AAGTGTGCTT GTAGATATGA AAGCTCAGTT TGCAAACTTA CCACCTGTTT
    TTTTTATAAC GAAATTGAAA TGGATAATAA TGCCAACAAA TATGAAAGAG
    TGATAAGAAT CTAGATAAAA TGATATTTTC AGCAATCTTT AATAATTGGA
    AGAGTTTCCG AATT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR