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53-2964-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15934335 [Map]; Strand: c
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: -125; Region: promoter
    Flanking Genome Sequence: 53-2964-1 - 5-prime edge 
    GAAACCAGAG ATGGAGGCGA CGTCGTTTTA GGTGGTAGGT CGACCCAAAA 
    TCCAATTCTT TGTAATTAAG ATTCCCATTC TTACCACAAC CAATCTCTCT 
    GACCAAACCC AAGAAAATCA TTTTTCTTTT CATAACATAT TAAAAGTGGG 
    CAAAACTCTG TTTTGTATAA TAACATGTTT TTTTCTAAAT TAAAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15934451 [Map]; Strand: c
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: -9; Region: promoter
    Flanking Genome Sequence: 53-2964-1 - 3-prime edge 
    CTGGTTTCCA AATCTCTTTC TCCTCTCCCT TTATAAGCTT GCGTTGGCCA 
    GTCGCTCATC TCGAAAACAG AGAGAAAAAG ACTAAAAACA CAGTTTAAGA 
    AGAAGGAGAG ATAGAGAGAG AAGAGAAAGA TAGAGAGGGA GAGGGGGTCG 
    CGTTTG

AT2G38080.1

Model type
Protein coding
Short Description
Laccase/Diphenol oxidase family protein
Curator Summary
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link
InterPro Scan - TAIR