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53-2975-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8490066 [Map]; Strand: c
      • AT5G24740.1 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -363; Region: promoter
      • AT5G24740.2 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -363; Region: promoter
    Flanking Genome Sequence: 53-2975-1 - 5-prime edge 
    CATTAACCTT TACATTTAAC GTGTGACATG GCGAAGCCAT GAGTGCAATC 
    CCATCAACCC ACAATCAACC CGAAACTTCT ACAAGAGCCT CAAACATCGA 
    AGCCATGAGT CCCAAAAATT TGCGAGTTTC AAATCCCTTA AATAAGAGCC 
    AATTAGCGTA TTAGCCGGTT AGCGTAATCA AATTTGCAAA AATTGGGAAA 
    ATTTGGTCTG ACCCGGTTCG GTTTGAAAGG TACGAAACCG AAAGAAATAT 
    TCGTCTTGTG ATTGTGAAGA AGAAAGAAGA CAAGTCTTTG TTTCGTCGAC 
    GGGAAAGAAA AACCCTACGA TATTCCTCGA CTCGTTTACA CTTCTCCGAC 
    CACCGTCTCT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8490197 [Map]; Strand: c
      • AT5G24740.1 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -494; Region: promoter
      • AT5G24740.2 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -494; Region: promoter
    Flanking Genome Sequence: 53-2975-1 - 3-prime edge 
    ACTNTAAGCG AGAGATGCAG TTTTTCTCTT CTTAGGATTT TATTTTGTAT 
    TGGAATTTCT CTTACTATTA GNTCCTTGTT AGTTTGATCT GTTTCTTTCC 
    AGTTTGCTAA GATCGTTNAA AAACTTAGTN ATGTGGGTAT GTCTTACCCA 
    TTTTTGTGTG TCTTTTGTTT GTAATTCTCT TTAGGCTTCT CGTAAACTCT 
    CGGGTTTGAG TCTCCCGCTA AACTTTCAGG CTTGTACTAG TTTGTAATGG 
    CTCTATATGA TATAATAAAG TTAGCACTCT TTTGACCCAC AAAAAAAAAA 
    AAAANNCNNA ACTTTTTAAA AANNTNAAAN TNTTAAAANN GGTTTTTNNT 
    AAAGGGNAAA ANANTTNTNN NNGGNNTNNN NTTTTTAANC CCAAAAAAAA 
    AAAAANNNNA NNNNTTTTTN NTTTTNAAAA NTTCNNCCNA AAAAAAAAAA 
    NTTTNGNNNA TTTAANGGGN CCAAAAANGN ANNAAANNGG CCCNTAAANC 
    CNNNAAAAAC NTNTNAAAGG GGANNAAAAA AAAAAACCNT TAANCNTTTT 
    TTTTTTGGGA NNAANGGGAA NCTGGGAANC TTNAAAAANC GTNAATTTNT 
    GGGGGCCCAA AANCNGGGGG GNCTTGGAAC CCNANCCCTG GAATAGGCCT 
    TAACGGGTTT TNTANNANAA GGCCCNNAAA AAAATTTNGG GNGGGGGGGA 
    NAAANANNAC ACCCTTTTTT TTTAAAANCT CN

AT5G24740.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24740.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1).
Link
InterPro Scan - TAIR