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53-2978-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356325 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1165; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 1067; Region: intergenic
    Flanking Genome Sequence: 53-2978-1 - 5-prime edge 
    GATATAATAC GATAGAGGAA GGAATTAGTG ATAGACCCAC GGTGGGGCTA 
    AAAGGATGTG GACAGGAGTG TGTAGGTCCT CTCCTCCTCC TCCTCTACGG 
    TTTTCGCTAT TTCTATGACG TTGTGATGAT CATATTGGCC TTTTCTTCTC 
    CCCCTGTCGA TTCAAGCTTT TATTTTCTAT GTTTTGTTTA GCCAAGGAAA 
    TTTTGTGTAT TTGTGTCTTG TTTTCATGCC TCAAGGTCTC TTCTTGCCTC 
    AATTGGTTTT CTCTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356209 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1049; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 1183; Region: intergenic
    Flanking Genome Sequence: 53-2978-1 - 3-prime edge 
    ATTATATCCG AATACGTTAC TTTTCTTTCC CTACTAGGCT ACTAAGTAAT 
    ATTTATGTTT CCTTTTGCAT TGATTATTTG TAAGTGAAGT TATGATTATA 
    CATAATCTTG CAACTTGAAA CTCTTTTTGT TTTTTCTTGA ATCTTGGTAT 
    GAATCAGAAG TTGACGAGCT TAAACAATGA AAATGCGATA GTTAGATGGG 
    ATTCGAGAAA AACAAGATCA ACAACAATAA AAGTGGTTCG ACGAGTTATA 
    TAACTTTTTG GGTCAAATAA GTGATTATTA TTATATAATT TGTCTTGTAA 
    TGGAGTAAAA CGCATCAAGA CCATTCAATC AAACGTTTAC TAGTAGACAA 
    ACACACGTGG CGCTTATCTA GAACTTAATT ATTGGATTAA GCAAAGCAAG 
    TGCAACTGTG GANCNGGGGG GGNTTACCTN CNCCNCNTGN CCNCNAACTG 
    NNNATAAAAT ATTTAGNAAA ANAGAGGGGC GGGNGCATNA TNCNCTGATT 
    ATTGNNNCTA NNNTGNTAAA TAACGNCCNT GNTNCTTNGA TTNNTAAAAN 
    AANAAANNCC ANNTGANCTG AANNNTGNNT TGNGGNNGAC AAACNANNAN 
    NNGNCNNNTG GGGGGGNNTT NTNGNNGNGC CCNCANACCC NCNNNANNNA 
    NNNGNTNNNG GGGGNNNNCN NNNNNNNA

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63220.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 6493 Blast hits to 4467 proteins in 250 species: Archae - 4; Bacteria - 460; Metazoa - 4606; Fungi - 8; Plants - 1152; Viruses - 24; Other Eukaryotes - 239 (source: NCBI BLink).
Link
InterPro Scan - TAIR