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53-2979-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24040700 [Map]; Strand: w
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: -289; Region: promoter
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -794; Region: promoter
    Flanking Genome Sequence: 53-2979-1 - 5-prime edge 
    CCCAGAATAA CTTCATGACG GTGATGTTGG GACATTGTTG TCCTCTTGAC 
    CCTCATCTTC TTCCCTTGGT GAAGGGTTAG GCTGCACTAG ATGACACATT 
    TACTCAATTT TTCACCATTG ACTTATCAGA AGTCTTTCTT TTGTGAATGA 
    TTTGGGTTTT GTATTTACTA CGAAAAGGAT ATTCATTGAA AAACACAAAA 
    ACAATAAACA AAAGGGGACA ATCTTTGTTT GGACTTTGGA CTCGTCTTAT 
    ATAATTGATA CCAATATTTA TTACTAAACG TGCTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24040599 [Map]; Strand: w
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: -188; Region: promoter
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -895; Region: promoter
    Flanking Genome Sequence: 53-2979-1 - 3-prime edge 
    ATTCTGGGAA ACTAAGGAGC AGACCAAGAA GCACAGTTAA GCAATAAATT 
    GTCACATTGT AGGACAATCG ATAATATAAG ACGAGTCCAA CAAGTTTAGC 
    CTTCAGGTTA TTAGCCTGTA ATCGNTTTTT TTAATGAAAT CATAACAATA 
    TTCTTTTTCT TTAGTTTATA TAGAGAAG

AT5G59662.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59660
Link
InterPro Scan - TAIR

AT5G59670.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR