1. Home
  2. Mutant Lines
  3. 53-2981-1

53-2981-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23818955 [Map]; Strand: w
      • AT5G59000.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2981-1 - 5-prime edge 
    GGTCGATTTA GAGTCCGGCG GTGTACCGGC GCCGGANAAA CAGCTACATT 
    CCGGTGGTAA GAAGAGGAGA ACTAGGAGGA GAAAGAGGAG GAAGAAGAAG 
    AAGAAGAAGA AAGGTGGAAG AGATTGCAGG ATCTGTCATC TTCCTTTAGA 
    GACTAACAAA GAAGCTGAAG ATGAAGATGA AGAAGAAGAA GATGATTCTG 
    ATGATGATGA AGATGAAGAA GATGAAGAAG AAGAAGAAGA AGAAGAAGAA 
    TATTATGGTT TGCCTTTGCA ATTAGGTTGC TCTTGTAAAG GTGATTTGGG 
    TGTTGCTCAT AGTAAGTGTG CTGAGACTTG GTTTAAGATC AAAGGAAACA 
    TGTAAGTTTC TCTTCAAGAC TACTTTTGTT TTTTTTCTGC AAAATTCTAC 
    AGATTCTGTG AGAACCAAAG TAGTAAAGAA TGAAACTTTA TAAGGAAAAA 
    ATGTATTTCC TTTTTATGTA CTTTGAGTCT TTTTTCTTGT CTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23818839 [Map]; Strand: w
      • AT5G59000.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2981-1 - 3-prime edge 
    AATCGACCTG AGACAAAGAA TCCAAGTCGG AGGAGTCACC GTCGATGCTA 
    ATTTCGACGG AGTACGGCGG CGAGTCTGTA GGATTCGCCA AATGGTGATG 
    AGATCCAAAA GCAAAAGAAG GCATTTTTTT CTTTCTTTGT TGAAGATTAA 
    AGCAAAGAGG AACCAAAGGG GTCACTCATG GGTTTTACGA GGAAAACAAA 
    AAACAAAATC ATAAAAAAAA ATAACCAAAA AAAGAATTAA AATAAAAAAA 
    AACCAAAAAA NCTAATTTTG TCTTCAAGGG TTNNTNGAAT TTTTTNTTTT 
    ANNAAGTTTT TANCTTGCAA AAAAAAAATG TTGGAAAAAN AAAAAGGAAA 
    AAGCTTCCAN CCCGGGCCNT NAACCNCCCN GCCCCTTATA GNTTNGNGNN 
    TNNNAACANG GANCCANTNT TTACCCCTTT AANACCNGGT TGNGGNTNAA 
    NTNCTNTTAT TNNNTNNTNC NCNTGACNTN NNGNNNTTTT NNNTNCNAAA 
    NNCTNACCNA NCTTNTNNTN NCTTNNNNAA NNTNCCNNCC CNNNC

AT5G59000.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR