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53-2982-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19271572 [Map]; Strand: c
      • AT5G47500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2982-1 - 5-prime edge 
    CGGGTAACAG GTACGGGTCC ATTGTACGTG GGCCGGGCCA TGGGACAATA 
    CTCACGTATC GTTTACGCCT ACACTTACTT TGATGCTCTC GTCGCTCACG 
    GTGGTTGGGA CGATTGGGAC CACAAATCCA ACAAAAGCAA GTACGTACTA 
    CTAAAAACAA AAATGTGTAA GATTTTAGTT AATCCGAAGA AATTAATGAC 
    TCTCAAAAAT GTTGAAAATC ATTAGGACGG CATTTTTCGG AGTGTACAAT 
    TGCTATGGGC CAGGAGCAGC AGCGACGAGA GGCGTGTCTT GGGCTAGAGC 
    TTTGGACTAT GAATCGGCCC ATCCATTTAT CGCTAAGAGC TTCGTTAATG 
    GGAGACATTG GATCGCTCCT CGAGATGCTT AACCAACTTC AAACCTTGGC 
    GGGGTTTCTT TTCCTAATTC CTCGGTTCCT CCCAGTCCCA AGTCCTAAAA 
    GCTTACTATA TTTTTATCAT TCGTTTATTT CTTTTATTGT TTATTTTTTC 
    CAATTTATTT ATACATTGTG TGATAGTACA ACAAAGTATT GCTTCTTCTT 
    CATCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19271688 [Map]; Strand: c
      • AT5G47500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2982-1 - 3-prime edge 
    GTTACCCGAC AACCCACGAA CGCGAAACCC GTTTTCTCTT CCGGGCATGT 
    CCTACCATGC GCCGCTATCG ACCCGAATCT TGACGCTATC GAATGCAACT 
    CACAATCCTT CACCAACAAG TAACACACAT TAACAAGTTT ATTTAACAAG 
    TCCCAATACT TGGTCTATTC CTCCTCGGAT ATTCTGGTTA CACAAAAAGT 
    AATATATTCA ACTTTTGTTT TTGTTACTAT ATTCATAATT AATGCTATAG 
    TAAGTATTAT TTAGGAGTCC TTACTTTATA CATGGAGCGG CCGTTACCAA 
    AGATAAAGTC GATAGAGCCT TCAATGTAAC ACTCCTTGAA GTAATGACGG 
    CCAGCATCGT CGCATAAAGT GTCTTGTGCA CCGTAAAACC CGCAGCCGGA 
    AAAGAAAGCT

AT5G47500.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR