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53-2990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134958 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2990-1 - 5-prime edge 
    TCTGCCATGA CCATCCACTT GTCTTCCTGA AGAAAAGACA GGAGAAAACC 
    CCTTGTGAAG TTTGCAAGAA TAGAATTATT GGATCATCCT ATTCATCTTC 
    CTCGACGAGA GTTGTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134842 [Map]; Strand: w
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2990-1 - 3-prime edge 
    ATGGCAGATG GGATGTTCAA TAGCTGGCGG TGGTGGGTTC ATCCCACAAG 
    TCAAATCCAC CTTGATTTTA CATGTGGAAC AACTATAAAA GTACTTCGCT 
    GGCTTTGTTT CTCCACACAA AGCACAGAAA CAACTCCACC ATCCCTCTTC 
    ATATGTGAGC AAGAGAGGAT GTTGGGGGTG GAAAAGAT

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR