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53-2994-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19719687 [Map]; Strand: c
      • AT5G48620.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2994-1 - 5-prime edge 
    CAAGTAGGGT CTTTGATAAT TTGTAGGAAG TTCTCTTCTT TCGCTTTAGA 
    TAAACATACT TCTCTCATCA TGTCGNGCAT TNGACAATAT CTCGATNCCA 
    AACTCAAATA CCTGTTGTCT GCGATAACCA ANGGGCTCCT CACTAGCTNT 
    TCTAGGNAGT NTTCTNCACT ATCTGGGATG GNGGAGNNNN CANNNGNCNN 
    TNNTNCAGNN NAAAAATAGA NCNCATNATG NATNGATATN CCAGCACCTG 
    CCGGGAAATG GGCCNAGGAG GANGAAGCCA TGCTNTGACA NGCGGTNNCC 
    AATCTNCATA GCNNNGAGGA ANNNTTGNGN GNACCNGACA GANACATGGN 
    GGATNNANNC CCGATCGGGC GNCTAGGAAN GNGNGGGNNC GNNNNNNNAN 
    NCCNNNNNNC TNNNGNGNGN GNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19719803 [Map]; Strand: c
      • AT5G48620.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2994-1 - 3-prime edge 
    CCTACTTGCA CCTCTACCAT CAATGCTCAA TCTCCTCGTA GATCTCGCAG 
    ACTCAGCATA CATAGTGGTA AAGCCTTTCT TATATTGGGA CACAGAAACA 
    ATACAAAGGT GAGATCTCTT ATAGTTTCGA GATTCGAGGA AGACTTTTGG 
    ATACGATCAG CTTCAGTCTT CCACAACTTA ACATTGCTCA GGGTTTTGCA 
    TCTTTCTTGG GTAAAGTTTG AAGGAGGGAA GTTACCTTCT AGCATTGGAG 
    GGCTCATCCA CTTGAGATAC TTGTGTTTAT ACNGGAGCTG GGGTATCTCA 
    TCTACCTTCT ACTATGCGGA ACTTAAAGCT

AT5G48620.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR