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53-3003-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11705145 [Map]; Strand: w
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 3383; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -7968; Region: intergenic
    2. Chromosome: 5; Position: 11723507 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -1943; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15770; Region: intergenic
    3. Chromosome: 5; Position: 11730745 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -9181; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -8532; Region: intergenic
    4. Chromosome: 3; Position: 13587514 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 3540; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -14286; Region: intergenic
    5. Chromosome: 3; Position: 13589771 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 5797; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -12029; Region: intergenic
    6. Chromosome: 3; Position: 13591072 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7098; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10728; Region: intergenic
    7. Chromosome: 3; Position: 13591784 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7810; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10016; Region: intergenic
    8. Chromosome: 3; Position: 13592140 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8166; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9660; Region: intergenic
    9. Chromosome: 3; Position: 13592496 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8522; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9304; Region: intergenic
    10. Chromosome: 2; Position: 3615280 [Map]; Strand: c
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
    11. Chromosome: 2; Position: 3616872 [Map]; Strand: c
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron11 (CDS)
    12. Chromosome: 2; Position: 3618352 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
    13. Chromosome: 2; Position: 3621195 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron16 (CDS)
    14. Chromosome: 2; Position: 3621906 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon21 (CDS)
    15. Chromosome: 2; Position: 3623685 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron30 (CDS)
    16. Chromosome: 2; Position: 3626167 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron44 (CDS)
    17. Chromosome: 2; Position: 3626523 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 63; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 13080; Region: intergenic
    18. Chromosome: 2; Position: 3627080 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 620; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 12523; Region: intergenic
    19. Chromosome: 2; Position: 3718086 [Map]; Strand: w
      • AT2G09850.1 - [+] show detail - transposable element gene
        Distance: 7122; Region: intergenic
      • AT2G09860.1 - [+] show detail - transposable element gene
        Distance: 4363; Region: intergenic
    Flanking Genome Sequence: 53-3003-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTGAC AGAACTCATG GTTGCAACAG TGGGGATTTG 
    GAATTTTTTT GTGCTATTTT TCTTCTCCTT CTCCCCTTGC ATTTATATAT 
    TAGCTAATTA AGCTACCANN NCGGGCCGAA ANCCACNCNT NCNCTNTAGA 
    TNTGTGTGNA ANANCAAGGA NACACTTAAN NAGNCATCNN AGAACGGGNA 
    GCNGACNAGG TTCTTATACT CAANCATACA CATGACANCA AGTCATATTC 
    GACTCCAAAA CACTAACCAA CCTTNTTCTT GCTTCTGAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16739367 [Map]; Strand: c
      • AT1G44050.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3003-1 - 3-prime edge 
    TCTGTGGGTG TATTTCACAA GGAGGAAATT GATGGAAAAT CTTTTTTGGT 
    CTACTCATTA ACACAAATAG ACAGCCCAAC CTCTTCCGGT GAAGCACTAG 
    CCATGGATTC TGGCGGCGAC GACCTCTCTT TTCAACCTCT TTTTTTTTGT 
    CCTAAAACAC GTATGGAATT TCTAAGTTTC AACGAANATG AGGACAACAC 
    AATGCAGCCA TTCAATTCGT CCCCTCATTT GCCAAGCNCA ANAAACAATG 
    ATCGGAAAGG CCAATATATG CTANATNGCT ACAACNATAA GCTCTGTAAG 
    CTCCCTGTAG TCCCTCTNTT TNGGNGCAAT AATAAACAAC CTGATAGGCN 
    CNAATTCAAG NGCAAGGTAT GCAATTCAAA ACTGCTCAGC GTCAGCTATT 
    ATGTATGTCT TCAATGTAAA AACATGTT

AT1G44050.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G55780.1); Has 1688 Blast hits to 654 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 1656; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09187.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G09850.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.4e-23 P-value blast match to aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT2G09860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 6.1e-47 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31770.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31787.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR