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Mutant Lines
53-3011-1

53-3011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 10163156 [Map]; Strand: c
- AT3G27460.1 - [+] show detail - SGF29 tudor-like domain
  Distance: -897; Region: promoter
- AT3G27460.2 - [+] show detail - SGF29 tudor-like domain
  Distance: -897; Region: promoter
- AT3G27470.1 - [+] show detail - Protein of unknown function (DUF707)
  Distance: 0; Region: exon1 (5UTR)
- AT3G27470.2 - [+] show detail - Protein of unknown function (DUF707)
  Distance: 0; Region: exon1 (5UTR)

GTGACAACAC CAAATTCAGA ATTCGATAAA CACAAAACTC AGAAAGCGAT 
CCGACCACCA TTAGTAAACG GATTCTAGCT TCACAATGTT TGGATCTTCT 
TCAGCTTTGG AATCCAGAAA TGGTCCACGC GTTTCTCGAA ATTACTTGCA 
CGAAAACGGC AAAATCGGTA GCGTCAAAAG AATAAAGCTC AAAATTTCTG 
TTGACGAAAA TTCTCTTGTG AACTTCAATT TACTACGTGA TCAATCAAGG 
CCCATTAAAG GCCTACTTTG TCTAAATTGG GCCTTTCATT TAGATACACN 
TGTCAGGCAT TGGAGTTCGG ATGTTATGNT TGGAGNNANN AAGGANNAGA 
NAATCTNACT TTTTTTTATT NNTAAGGCAN CACTTATAGA ATAAGAAACA 
ACCNATACNA ATNNTATNAA ATTTACTTTA TAAATACNTT GTNGGNAACT 
AACATTTTGG TTTCCTTTTT TNANAACCCC TTTTGGGAAA AAAAAAAACT 
NTTTGGACCN NACCCTGGNG GCCGGGGGAA ATTTNANNNG GGGAAAATNT 
TTCNAANCCN AAACNAAAAA ACCGGGNTNT NNAAANTTTT TTTTTTAGCC 
GCCCGGGGGN AAAAAAAAAG GNGTTTCCCT TNTNTTTTTG GGGGNTAAAA 
AAAACNACCA AACCCCNCCC CNNTTTTNTG TTTTNAATGG GGGGCCAANA 
AAAAAAAAAA GCCTTTNTTN

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 10163270 [Map]; Strand: c
  - AT3G27470.1 - [+] show detail - Protein of unknown function (DUF707)
    Distance: 0; Region: intron1 (5UTR)
  - AT3G27470.2 - [+] show detail - Protein of unknown function (DUF707)
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 53-3011-1 - 3-prime edge
```
CTATTGTCGC CAATTAGTCA GACAGGACAG AAACTGGTTT TCTTTCTATT 
TTGGTATATG ATCGCATGTT CTTCCATTGT CGTACATGAT TATGTTGTCG 
TGTTTATTGT TTTTACCTTA TATAGAATTT TGAGTGCATA GTTGAAATTC 
TGACTTTCAT GTAATGGAAA GGAATTAGCA AAATCTAATT ACGTTTAGGT 
TTAGGTGTGT AATTTAGAAT GGATTTTGTT GTTTTTTGAT ATGATTGAAG 
TGATTTGG
```

AT3G27460.1

Model type: Protein coding
Short Description: SGF29 tudor-like domain
Computational Description: SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G27460.2

Model type: Protein coding
Short Description: SGF29 tudor-like domain
Computational Description: SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 324 Blast hits to 324 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 113; Plants - 51; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G27470.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF707)
Computational Description: Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G27470.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF707)
Computational Description: Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR