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53-3013-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5990275 [Map]; Strand: c
      • AT5G18110.1 - [+] show detail - novel cap-binding protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G18120.1 - [+] show detail - APR-like 7
        Distance: -681; Region: promoter
    Flanking Genome Sequence: 53-3013-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCANATTA GGTTTTGCGA ATTTGTTTAG ATGTATGTGA 
    GCTCAAATGT TATAGGATTT TCGTATTGGT GGTATTGATT GTAGCTAGAA 
    CAAGGCAGAT TGATTTAGAG GAACTGATTT CATTGTTAAG AGTAAGTACN 
    TGGCTCAGTG ACATCTAGGA TTTTTGGTAA TGATGCAGTA CAAGTTTTCG 
    ATATGGTACA CTCGTCGCAC ACCAGGGGTT CGGAACCAGT CTTATGAAGA 
    TAACATCAAG AAGATGGTAG AATTCAGCAC GGNAAGTCTA AATATACTAC 
    TGGAAGTTCA TTGTTGAAGC TGTTTGCGAT ACTATCTTGT TCGTTTCTGA 
    GTTATGGCTT TTATAAACTA GGTTGAAGGA TTTTGGGCCT GCTACTGTCA 
    CCTTGCTCGT TCATCTCNCT TCGACGANNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNCN NNNNNNNNNN NNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNCN NNNNNNNNNC 
    CNNN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17670352 [Map]; Strand: c
      • AT2G42440.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -535; Region: promoter
    Flanking Genome Sequence: 53-3013-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    TATTTCCATA GAAATAAACA TCTTACCGTA TAACTGGATT TCATTATCAC 
    GAAACTTGAA TGAGACCGCT TAACCTCTTC ATTAATATTT AATTTGTGTA 
    TAACTCATAA CCATAGTTCC AAAAATATTG TAGAGACAAC NGGAGACATT 
    GTATGGTATG TGATACGTCA TATAGTTTGA GTAGAGTGTG ACACAGTTTT 
    TTTTTTTTTT AAAGGGNNNA CCTTNNNGGG NANTNGGGCC NCCCNAANNA 
    ANNNANTTNT NTNNAANGGG GNCNNNAANA AACCCCCCNC CCGGGNCCGG 
    NNCCCCCCCG GGCCCCTTAN AA

AT2G42440.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Computational Description
Lateral organ boundaries (LOB) domain family protein; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1); Has 862 Blast hits to 857 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 862; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18110.1

Model type
Protein coding
Short Description
novel cap-binding protein
Computational Description
novel cap-binding protein (NCBP); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E (TAIR:AT4G18040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18120.1

Model type
Protein coding
Short Description
APR-like 7
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.
Computational Description
APR-like 7 (APRL7); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APR-like 5 (TAIR:AT3G03860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR