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53-3026-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24173289 [Map]; Strand: c
      • AT5G60030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -314; Region: promoter
      • AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
        Distance: -114; Region: promoter
    Flanking Genome Sequence: 53-3026-1 - 5-prime edge 
    GNTGAANNAA NGNGAGAANN AANCCGNGGN NACCGACNGA NNNGNNTNAC 
    TCAGANACNG NCCGACCACN ACAGCTTTNN CGCATANANN GATNTAAANA 
    ACGATNNACC AAAGANNGTG AATANAACGT GTATGNCNTN CCAGNTAATA 
    CNNATGCAAT ATCCTNNNAA NACAAACCGG NNNCNAGGNA NGGGCNTGCC 
    CTAGTACTGT TTGGGCGTTT TTTTATTTTT GGGCTTTGTT GGCCCATCTA 
    TGATATGTTC ACTTGTGAGA AAAAAAAAAA NAANCAGGGG GNCCTTNNGA 
    AGNGGGGTTT TNNACTNNTT NNAAANGNGG CAANTTTTNN GGGNAAATGG 
    CCCNANTTNG GGNANTNAAA NNGGNNCAAA AACNTTTNNN GNTTTTTCNN 
    ANAAAAANNG NNNCCGNAAA ANTNGTNAGG GCNAAACNAA TNNCCNTTTA 
    AANGGGGGTN AAGNTNCNAN CCGGGNCCGN NAACNACCCN NGNCCNNANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24173451 [Map]; Strand: c
      • AT5G60030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -476; Region: promoter
      • AT5G60040.2 - [+] show detail - nuclear RNA polymerase C1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60040.1 - [+] show detail - nuclear RNA polymerase C1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3026-1 - 3-prime edge 
    TGTTACTTAG CTCTGCTGCT TCTTCTTAAA CCCTAAACCC ACCTTCCTTC 
    ACCGTCGTCT TTTTCACCGT AAGTTGATTC TTCGATCGGT CTCGATTTTA 
    CTGTGTTTTT TTTGTTTCTC TTACGCCGAT TCAAAACTTA AGTCGTTTTT 
    TTTTT

AT5G60030.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.1

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60040.2

Model type
Protein coding
Short Description
nuclear RNA polymerase C1
Curator Summary
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational Description
nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1).
Link
InterPro Scan - TAIR