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53-3027-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16443500 [Map]; Strand: w
      • AT2G39360.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -3346; Region: intergenic
      • AT2G39370.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 630; Region: intergenic
    Flanking Genome Sequence: 53-3027-1 - 5-prime edge 
    TTNNCGATAT ATATCCTCCT TTTCAACTTT AAGCAGTGAA CCTTTCTATA 
    GTGATAACGA CGGTCTGACT CTTAACACTC GTGTTTAGGG AATCTTCATC 
    TCACGTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16443384 [Map]; Strand: w
      • AT2G39360.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -3230; Region: intergenic
      • AT2G39370.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 746; Region: intergenic
    Flanking Genome Sequence: 53-3027-1 - 3-prime edge 
    ATCGGGAAAC ATGGATCCAT GCTTTCAGAA AGCTGATTGC TACTTCGCTC 
    CATAAATTAA GTGTAATTTG TGTAAACAAA TAATTTATAG TATACTAATG 
    GAGTCATGGA GATATTCAAA GAATATAAAG CATCATTACA AGACATGAAT 
    GACNTTACAT AGCAGCGTTA GAGGTTAGGT CGAGTTCCGA AGTCTTATTA 
    GTCCCCTATT TCTATGTTAA GTTTCTTT

AT2G39360.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: hercules receptor kinase 1 (TAIR:AT3G46290.1); Has 117164 Blast hits to 115761 proteins in 4506 species: Archae - 99; Bacteria - 13343; Metazoa - 43886; Fungi - 9766; Plants - 32814; Viruses - 370; Other Eukaryotes - 16886 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39370.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR