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53-3030-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9083672 [Map]; Strand: c
      • AT5G26000.2 - [+] show detail - thioglucoside glucohydrolase 1
        Distance: -1288; Region: intergenic
      • AT5G26010.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 1721; Region: intergenic
    Flanking Genome Sequence: 53-3030-1 - 5-prime edge 
    CCTATAATAT GGTATATCAT ACGAACCACC TAAAATATGT GATGCATGCA 
    CTTATTAAAT TGCATTTTAC ACCATGTTTA TGTTTAAGTA CGTCAACATT 
    GAATTAGCAC AATGTATACN GTACAAAAAA GACTACNTTT CATGGTAATT 
    TAATATTCTA ACTCAACAAG ATATCATAGA ATGCAATAAG AAGTTGTCAT 
    TGCAATGAGG TACTATCAAA ATTCTAAAAG TCTCAATTGT GTAATTTTCC 
    CTAAGAAATA GGGAAAATAC CATTTAAATA TCAAACATTT ACAAAATGCT 
    AAACAATGTT CAAATTTTCT TTCTATACTT CTTAAGTTTT AAATACGAAA 
    TTTCTTTCAC AGTACCAAAT TAAAACTTTG TTAATATCAT CGGATATTTC 
    TAAAAAAGGA AATAATTTAC ATGATCCTCA ATCCCCGAAA AAAAGTATGG 
    AAGATAACAG TTCTGCATAG GATAAAGCAC CTCCAATTTT AATAACGATT 
    AAAAAAAAGC AAAAGGGTGG TTGGTTTATA TTTATTGACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8490197 [Map]; Strand: c
      • AT5G24740.1 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -494; Region: promoter
      • AT5G24740.2 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -494; Region: promoter
    Flanking Genome Sequence: 53-3030-1 - 3-prime edge 
    ACTTTAAGCG AGAGATTCAG TTTTTCTCTT CTTAGTATTT TATTTTGTAT 
    TGGAATCTTC TCTTACTATT AGTTCCTTGT TAGTTTGATC TGTTTCTTTC 
    CAGTTTGCTA AGATCGTTTA AAAACTTAGT TATGTGGGTA TGTTTTACCC 
    ATTTTTGTGT GTCTTTTGTT TGTAATTCTC TTTAGGCTTC TCGTAAACTC 
    TCGGGTTTGA GTCTCCCGCT AAACTTTCAG GCTTGTACTA GTTTGTAATG 
    GCTCTATATG ATATAATAAA GTTAGCACTC TTTTGACCCA CAAAAAAAAA 
    AAAA

AT5G24740.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24740.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1).
Link
InterPro Scan - TAIR

AT5G26000.2

Model type
Protein coding
Short Description
thioglucoside glucohydrolase 1
Curator Summary
member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.
Computational Description
thioglucoside glucohydrolase 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glucoside glucohydrolase 2 (TAIR:AT5G25980.2); Has 10598 Blast hits to 10348 proteins in 1443 species: Archae - 123; Bacteria - 7528; Metazoa - 688; Fungi - 189; Plants - 1364; Viruses - 0; Other Eukaryotes - 706 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26010.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G32950.1); Has 6065 Blast hits to 6055 proteins in 312 species: Archae - 2; Bacteria - 39; Metazoa - 1411; Fungi - 761; Plants - 2573; Viruses - 5; Other Eukaryotes - 1274 (source: NCBI BLink).
Link
InterPro Scan - TAIR