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53-3032-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110749 [Map]; Strand: w
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: -31; Region: promoter
    Flanking Genome Sequence: 53-3032-1 - 5-prime edge 
    CTGTAAGGGT AATAAGGGTA ATTCCAACCA TAATTCTCCA TCGTAACTAA 
    CTAACACCAC AACTGGCTAA TTCATAAAGA AATTCAAACG TCTTCAACGT 
    TTTCTCCGAT CAACATTTCT TCATCAGAAG CGAAATTTCA AAAAAGCAAC 
    AATGCGGTTT GAGAATTGAT CAGAAGAGAG ATATATATAA GTACATTCGG 
    ATCAGAGTGG AGCTTAGTTC AAAGGAATTA GGTGAGACTA CTTACCTTCG 
    CTGAAAATGG AGGAACCGTT GTAAAATTTT GATCATCGCT TCTTCGCTTA 
    GGGGAAGAAA GAGTCTCTCT GCAAAAATTT TGATTTTGAT TTTATTGGTT 
    TTGGTTTTGT GGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110633 [Map]; Strand: w
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3032-1 - 3-prime edge 
    CCTTACAGGC CTCCCCGGCC TAATCCTCCT TACCCAGCAC CGCCTCATCA 
    CCATGGATCA ATGTCTCATT CGGGTCCATT AGACCACGAC CACCCTCCAA 
    TGAGTTACTA TGCTTCTTTT GATTACCAAC ACCAACCTCC TCCTCCTTAC 
    CCTCCAGTGA GTTACTATGC TTCGTTTTCA AGTCATTCAG ATTTATCATA 
    CTCAGGCAGG CTAGATTCGT CTGGTCATGG TTTTACATAT ACCGCATCGC 
    CGCATAGTCC CGGTATGCAC ATTGTGCCCT TTGGTAAAGC CTCCTTGAAG 
    GTCCTCTTGT TGCATGGTAA TTTGGATATT TGGGTTTCTT GTGCTAATAA 
    TCTACCAAAC TTATATTTGT TTCATAAGAC ATTGGGTGTT GTGTTTGGTG 
    GCATGACCAA TATGATCGAA GGCCAGTTGA GCAAGAAGAT CACTAGTGAT 
    CCTTACGTGT TCATC

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR