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53-3040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93835 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -688; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -88; Region: promoter
    Flanking Genome Sequence: 53-3040-1 - 5-prime edge 
    GCTATACATT AGATTAATTA AAAGAAATTA AATCTGTTTT CACTCCATTT 
    ATCAAAAGTA ACATCTTTAA CGAATCAAAC CCATAAGGTA CTCTTACTCT 
    CTATTAATAG AGGAGAATGT GTCATCTTCT CATTACTCAA TAAGCATACT 
    TATCATATAC ACAATATCAC AATATGAGAA GGTCAAAATG TTCTTGCCAT 
    CATCATCTAC TTGTTCATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93713 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -566; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -210; Region: promoter
    Flanking Genome Sequence: 53-3040-1 - 3-prime edge 
    CCACACATGC GGAATTGNAN TAGAGCTTGN TNATGTGCNC TTNGATANAN 
    ATTAGTTCGG CTGGGGTNTN AGAAGGAAAC TACGTGGTCA CATNGCTATA 
    TCTANTTGNN NCTATTTTGG NGATAACATN CATNAATACA CATGTATATG 
    TCTAGAGTAG TAATAGGAAC TTGAGATTTG AGCTAATAAT AAGATTTTGA 
    TTACTTGAAT T

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR