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53-3045-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4778061 [Map]; Strand: w
      • AT2G11840.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-3045-1 - 5-prime edge 
    NNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT TAGTTTCTGA AAATACTCTG TACGCTTTAA 
    CAAAAAAAGA AAAAAAAATA CTCTGTTTTG TTAATTATAA TAACCTATGT 
    ACGAAGAGCC TTAAATACTA TACATTAAAC ATTGTTTAAT TTTTTATATC 
    GGTTTCTTAT TTCANATCAT TGTAAGAATA ATCGATCTTG TTGNGTAATT 
    CAGCTATCTT CTTGTCAAAA GCCATAGCTC CAGTATCTTG TCCTTGAATG 
    ATTTGTTGAA TGAGTAGCTT AATTTCAGGA TCTTGAGCTG CTAGGGCTTG 
    TTGTGGTTGT TGAGTGAAGT TGGGTGGATT CTGCTGTTGG TAGCCTCCAT 
    TAAACTGTTG TTTAGGGACA TAACCTTGGT TGTACTAAAC AAAAGGCTTA 
    NACTGATTCT GTTGTGGTGG ATACACTTGA TCTTGGGGGT TAGCTACATT 
    AGTGCTTCTA TAGGAGGTTT GGGTTGGCTT TGTANTTGNT GNACCCCTNG 
    TTGAACCCTC CTTGGTTCTG GATGTANCAC AACTCTTNAN TTNGANCATT 
    CCCCNCTTNT TGCNTTNGGA ANNGCTCTNC NCNNNGANGN ANNGNNTNNN 
    CTTTTGNTGA NCTANCAACA NNTTGNNTNN CNGNNNNTNN ANANCCNNNN 
    NNNCNNGNNN NGNNNNNNNN NTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134018 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -508; Region: promoter
    Flanking Genome Sequence: 53-3045-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCATTAGCAG TCGAAGATTT ATTCACATCG AGTTAATAAG AAACGCCACT 
    TGAGTTATTA AACAAAACCG GTATTAACTA GTTGAGATCC ACGACGATAT 
    TTTCTTTAAA AAAATGATTC AAGCT

AT2G11840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 5.2e-173 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR