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53-3052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9673058 [Map]; Strand: c
      • AT4G17250.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat ...
        Distance: 0; Region: intron1 (CDS)
      • AT4G17250.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT4G17260.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: -933; Region: promoter
    Flanking Genome Sequence: 53-3052-1 - 5-prime edge 
    CCGACGCTTC CCTCACTNNC ACTGCTGNNN CCNNCNCTTN ATTCCNATCN 
    CTCGNGCCGN GNCGCCAAAG CATCCTGATN CTATGTCCGA TTCCATNTTT 
    TNCACATNTT TCAACAGAGC CTNCTCTGTT TCAATGNTCC TTGATTCGNA 
    CTTCATCAAA AGGGTTTGGC TGATTCGGNA CATTGAGTTT GCTGCTTGAG 
    TCTTGATGGG CCAGNGCGAG GGCTTATGCT TCATGCATAG TATCCGATTT 
    TTCTCCCATG ACTCTGTAAA CTCTTTTTGT GCTATATCTA CCAGCTCTTT 
    AAGAACTTCC TGTGGTGTTT TGCTATGTTG CTTGGATAGT TTTCGAAGAT 
    CCACGTTGAG CCATTTATGG TAGAGATCAA CTGCTAACCA AACAACTTCT 
    GCAGCTTTCC TGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9673174 [Map]; Strand: c
      • AT4G17250.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat ...
        Distance: 0; Region: exon2 (CDS)
      • AT4G17250.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT4G17260.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: -817; Region: promoter
    Flanking Genome Sequence: 53-3052-1 - 3-prime edge 
    AGCGTCGGTG AGAGAAGCGG CAATGCATTT GGGGAGAACA GAGAAGATAC 
    TTGAGATCGT AGACAGGAGA TGCATGCCTG CTTTGTCTCA TCACAAAGTG 
    GCAAAGATTG ATGAATGGAG AGAGTTTTAT AGGACCAATA AATCCATCAC 
    TTTCACTCAT CCTTCGTCCC AGTGTACGAC CCGTGAACTC ATTATCAACC 
    TAGAATAACA CATTTTCTTG TCACATTTAA AGAATTAATT ACGTTTTGTA 
    CATGATAAAA CCTAATTAGC AAATAAAATC CTTTCTTTGT CGGTTGATCT 
    AACTATTAAC ACTTGATGCC AAGTCTAAAG AGTTTATTAG TTTTTAAAAC 
    CCAGTTTACC AATAATAAGT TTCCTTTGTC GGTTGATGCA CTAGTCAAAC 
    TATCAAAGTC GNCAAGTTTG CTTTGTTGAC AAGGCAAAGC T

AT4G17250.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1); Has 31 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17250.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1).
Link
InterPro Scan - TAIR

AT4G17260.1

Model type
Protein coding
Short Description
Lactate/malate dehydrogenase family protein
Computational Description
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: L-lactate dehydrogenase (InterPro:IPR011304), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), L-lactate dehydrogenase, active site (InterPro:IPR018177), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 16816 Blast hits to 16800 proteins in 5066 species: Archae - 248; Bacteria - 11859; Metazoa - 1173; Fungi - 517; Plants - 405; Viruses - 0; Other Eukaryotes - 2614 (source: NCBI BLink).
Link
InterPro Scan - TAIR