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53-3070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5026609 [Map]; Strand: w
      • AT5G15480.1 - [+] show detail - C2H2-type zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3070-1 - 5-prime edge 
    ATAAGTCTTT GCTCATAACT TAAAACCCCA GATTCCAATT CACCACCTTT 
    TCTCGGTTTC TTGTTGAGCA AACAACCCAA ATCATAGCTA CTTTCAGGTC 
    TTTCAGGAGT AACACGTACT GCCTCAGTAA GAATTTTCAG TCCGCCTACA 
    ACCTTGGGAG CACTCTCAGA CAATAGAATC AAACAATCCG CCACTTCTAA 
    TTCTTCATCA GTCGCATCAA AAATAGAACT CGGTTCAAGA AACGTAGTAA 
    ATGAAGTCTT CCCAGACCTA GCAAGTCTCG ATCTTTTCTT CTTCTTCACA 
    AACTCAAGGC TACGAGACAG AGTCATCAAG GATTCTTCAC AAACCTTCTC 
    GTTCGGCGAT AAATGCATCA TCGAGCGATG ATTCTTAAAA TATTTCTCGT 
    ACCGAAACCC TTTTCCACAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5026488 [Map]; Strand: w
      • AT5G15480.1 - [+] show detail - C2H2-type zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3070-1 - 3-prime edge 
    TATGGNAGAA GGGTTTAGTA GTTNTGGAGC ATCGAAAGAA CCATCCTAGC 
    TTCTTGAGAG ACNATNACAG ATTGGATCAG CAGAAACGGA NAAAAGATGG 
    TGAATTTGAA TCCGGACTTT TGAGTAATGA GCAANGACTG CTAGAAGAAG 
    AGATTACTAC TCCTGTGACA TTCANAGGTC CAGCGAGTTN CTTGAGACAC 
    AAGTGTGCTT TGGATCCGAA NTGGAGGTGA ATTTGGTCCT GAGTTTTTGA 
    GTNATGAGCN NACACTGATG GAAGAAACAT GGAAAGAACC AG

AT5G15480.1

Model type
Protein coding
Short Description
C2H2-type zinc finger family protein
Computational Description
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G01030.1); Has 171 Blast hits to 168 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR