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53-3090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16878645 [Map]; Strand: c
      • AT4G35550.1 - [+] show detail - WUSCHEL related homeobox 13
        Distance: -1339; Region: intergenic
      • AT4G35560.2 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -2717; Region: intergenic
    Flanking Genome Sequence: 53-3090-1 - 5-prime edge 
    TCTGCTTGGT CTCGATACTT GACTTAGGGT CGCACATGCA AACCTCATTA 
    TTTTCTTCCA TAATGTTGAC AATTAAAAAA ATTACCGAAA CGAAAACACT 
    TTCCGGAAAA AACGATGAGG CGTTATATCA TTTAAAGAAA AAACGACGAT 
    ACTAATTAAA TAAACAAAAG TTCCGATAAT TTTTACGTAT AGGTTACGAA 
    GACAATGACT TGAATAGAAT TGTGAAGCAA GTATAAATTT CAAGTTTTGG 
    CTGAAAAATT AAAGTAATAA TTTGTGTATT AGTGTAAAAA AAAAAGTCCC 
    AGAATTAAGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16878724 [Map]; Strand: c
      • AT4G35550.1 - [+] show detail - WUSCHEL related homeobox 13
        Distance: -1418; Region: intergenic
      • AT4G35560.2 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -2638; Region: intergenic
    Flanking Genome Sequence: 53-3090-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCNN 
    TCTGTCTAAA GGTGAGCAGA CCNTGTTCAC NCAAANATAG GNNCANCAGA 
    NNGNTNGGCC TTNCACTGNT AGGANNATAA GATTAATACT CACAAAATTT 
    AAATATTCTA ATACTTGAAT TATATATATA TATATATATA TCACANAANA 
    GAATAATATA CATTAGANGA TTTTNTGATT AATTAAGNAG AGATTTTTTA 
    CTNACANAGC TCATTNATNT AAAAAATNNA CCAGTATAAT AATCATNTAT 
    TTNTAAAANT ATACATTANA NGATTATTTT NTAGTNTATG TCTNGGAGTA 
    NAACATTCAN CCNCCGGGAC NATATAGANA CACACACGGA NATATNCAGA 
    ACAAGACATT ATNNACGTNN GCATTATCNN TCGNCCAANT GATAGGGAAT 
    NTANATATAN ATGAAAATAG NNGCATACAA ATNTGNCCAN ATATATACAT 
    AATCTTAATN ACNTGACTGA CTTAGNGATG AGCCATATTA TNACCCANTG 
    GATTCTCTNT GGCCCAGCTN TCTNNGGATT CTTCTTTTAG ANNGGAGAGT 
    GGGGTGTACC TATAGCTTCT CNTGTCTTNT ATCCTTATTA TNNGCTCTCT 
    TCTGTGTTCN CTATCANNGA AATNTATATT CTTANTCCGG GTNCACAAAT 
    CTACTCANTG NTGTTTTTTA CCCTGNNGAC CANNGCTANT GNTATTANAC 
    GCTGAATCTC TCNCTACCAA AAAA

AT4G35550.1

Model type
Protein coding
Short Description
WUSCHEL related homeobox 13
Curator Summary
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
Computational Description
WUSCHEL related homeobox 13 (WOX13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 14 (TAIR:AT1G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35560.2

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G05570.2).
Link
InterPro Scan - TAIR