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53-3093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23998548 [Map]; Strand: c
      • AT5G59540.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -958; Region: promoter
      • AT5G59540.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -958; Region: promoter
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3093-1 - 5-prime edge
    ATGGTGTCGT TAATGAGGAG AGTGAGACCA AACCGTAGCT CTTCTTCTTC 
    ATCAGCTGCG ATATCAACTT CTTCTGATAA TCTGGATTTG AACATTGAAG
    TAGAATCTAG GGTTTTGGAT AGGTCAAATT CAGTGATGAG AAGATACTTC
    AGAAGAAACA GAAGTAACAG GGATTCTTCG TCTTCAGTTC TTCATTGATT
    CAGAAATATA TATATATATT ATTTTTTGGT TTGTTCATTC AACAATGTAA
    ATATAAGATT CAGAAGAAAA AGATTGGTGC TTCGTTCTCT ATTATCAATT
    CGATTAATTC TTCCTTATGT TGTTACATCA AANTGTATAA TGNTCATATA
    GAAGTGTTCA TCTCTCCTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23998675 [Map]; Strand: c
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3093-1 - 3-prime edge
    ACGAACCATC CTCCTCAATC TTCCACCGGA GCCGGAACCT GAGCCAGTAC 
    CGTTACTATC CGATTCGAGT GTACCGTGTG ACCTAACCCA TGAGATCCGT
    CTAGGACCAT CCTGGCTATT ACCAATCCCA CCACCATCCA TTTCTGTTAA
    CACCACTGGC AAAACTCTCT CTCCGTCTCT CATTGCTGCG TTAAACCTCC
    CTACGGCGAA TCCACCACCG GGAAGTCTCC AAATCGTCAT CCCCACGGCG
    TTATCCTCCT CGTTGTTGTT GCTCCGTCGA TTAGGCTCTG AAGGTAGCTC
    GAATCTGCAC ACGGGACAAG AGTTTCGAAT CGATAGCCAC GGTACGATGC
    AATCGTCGTG GAAAAGGTGT TTACACGGCA TCTCACGCGC CTCCGTCTCC
    GTCTCGAAAA TCTCCGTGCA AACAGCGCAA TTAGCCTCCG AGCCTATGTG
    GCAATCCGAG ATTTCGACTC TAGGTAAAGA CTCAATCGCC GATTTAGACG
    CCGGAGGGTT TCCAGATCTA CCAATTCCAG TAGCCGACGC TTCGATTTGG
    CTTAGCTGTT CAAGTAACCG

AT5G59540.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59540.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 7263 Blast hits to 7229 proteins in 962 species: Archae - 0; Bacteria - 1031; Metazoa - 70; Fungi - 654; Plants - 4685; Viruses - 0; Other Eukaryotes - 823 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59550.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR