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Mutant Lines
53-3093-1

53-3093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23998548 [Map]; Strand: c
  - AT5G59540.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Distance: -958; Region: promoter
  - AT5G59540.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Distance: -958; Region: promoter
  - AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-3093-1 - 5-prime edge
```
ATGGTGTCGT TAATGAGGAG AGTGAGACCA AACCGTAGCT CTTCTTCTTC 
ATCAGCTGCG ATATCAACTT CTTCTGATAA TCTGGATTTG AACATTGAAG 
TAGAATCTAG GGTTTTGGAT AGGTCAAATT CAGTGATGAG AAGATACTTC 
AGAAGAAACA GAAGTAACAG GGATTCTTCG TCTTCAGTTC TTCATTGATT 
CAGAAATATA TATATATATT ATTTTTTGGT TTGTTCATTC AACAATGTAA 
ATATAAGATT CAGAAGAAAA AGATTGGTGC TTCGTTCTCT ATTATCAATT 
CGATTAATTC TTCCTTATGT TGTTACATCA AANTGTATAA TGNTCATATA 
GAAGTGTTCA TCTCTCCTC
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 23998675 [Map]; Strand: c
- AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
  Distance: 0; Region: exon1 (CDS)

ACGAACCATC CTCCTCAATC TTCCACCGGA GCCGGAACCT GAGCCAGTAC 
CGTTACTATC CGATTCGAGT GTACCGTGTG ACCTAACCCA TGAGATCCGT 
CTAGGACCAT CCTGGCTATT ACCAATCCCA CCACCATCCA TTTCTGTTAA 
CACCACTGGC AAAACTCTCT CTCCGTCTCT CATTGCTGCG TTAAACCTCC 
CTACGGCGAA TCCACCACCG GGAAGTCTCC AAATCGTCAT CCCCACGGCG 
TTATCCTCCT CGTTGTTGTT GCTCCGTCGA TTAGGCTCTG AAGGTAGCTC 
GAATCTGCAC ACGGGACAAG AGTTTCGAAT CGATAGCCAC GGTACGATGC 
AATCGTCGTG GAAAAGGTGT TTACACGGCA TCTCACGCGC CTCCGTCTCC 
GTCTCGAAAA TCTCCGTGCA AACAGCGCAA TTAGCCTCCG AGCCTATGTG 
GCAATCCGAG ATTTCGACTC TAGGTAAAGA CTCAATCGCC GATTTAGACG 
CCGGAGGGTT TCCAGATCTA CCAATTCCAG TAGCCGACGC TTCGATTTGG 
CTTAGCTGTT CAAGTAACCG

AT5G59540.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59540.2

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 7263 Blast hits to 7229 proteins in 962 species: Archae - 0; Bacteria - 1031; Metazoa - 70; Fungi - 654; Plants - 4685; Viruses - 0; Other Eukaryotes - 823 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59550.1

Model type: Protein coding
Short Description: zinc finger (C3HC4-type RING finger) family protein
Computational Description: zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR