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53-3104-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22734706 [Map]; Strand: w
      • AT3G61430.2 - [+] show detail - plasma membrane intrinsic protein 1A
        Distance: 0; Region: intron3 (CDS)
      • AT3G61430.1 - [+] show detail - plasma membrane intrinsic protein 1A
        Distance: 0; Region: intron2 (CDS)
      • AT3G61440.3 - [+] show detail - cysteine synthase C1
        Distance: -957; Region: promoter
    Flanking Genome Sequence: 53-3104-1 - 5-prime edge
    CATGTCCCCG TAAGTAACCA GTCCATGTAA CAATTGCTAG AAACAATTGA 
    AATGAGTGAA CTTGAAGCTG CCATTAGTGT GCACTAAAGA CTGATTCTCA
    ATATTGGATT TGTTGCTTAC CGGCTTGAGT TTTGTAATAA TTGTGCAGAT
    TCTTGCACCA CTCCCAATCG GGTTTGCGGT TTTCTTGGTT CACTTGGCAA
    CCATCCCAAT CACTGGCACA GGCATCAACC CAGCTAGAAG CCTTGGAGCT
    GCAATCATCT ACAACAAAGA CCATTCCTGG GATGACCACG TGAGTTTCCA
    CACACTATAT ACCAAATCGC ATTCCAAACT CGGTTTCGAG CATTTTTCCC
    TGACAATTTC GTTTTTTTTT GTCGTCATTC CAGNGGGTGT TTTGGGTTGG
    CCCCTTCATT GGAGCTGCAC TTGCTGCTCT TTACCATGNG GTTGTCATCA
    NAGCCATCCC CTTCAAGTCC ANAAGCTAAG TAAAAACAAG ACATCAAGTC
    CTCTGGTTTC TGGCCTTGTC CTTAGTTGCT TCTATAGTTC TATTGTTGAT
    CTACTACATG TAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22734589 [Map]; Strand: w
      • AT3G61430.2 - [+] show detail - plasma membrane intrinsic protein 1A
        Distance: 0; Region: intron3 (CDS)
      • AT3G61430.1 - [+] show detail - plasma membrane intrinsic protein 1A
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3104-1 - 3-prime edge
    GGACATGAGA GTCACACTAA AGGCAGCTTA AAAGTTCACT CATTTCAATT 
    GTTTCAAGAA GCTATTAGCA GATATGTTAC AAGGAGTGGT AACTTACAGG
    GACATGAGAG TCACGAGCAT TTCTCTTGGC GTCAGTTGCT GAGAAGACTG
    TGTATACAAG AACGAATGTG CCAATGATCT CAGCTCCAAG ACCACTTCCC
    TTGGTGTAAC CATGAGCCAC AGTGTTAGCT CCTCCTCCTA GAGCCTGGTA
    TTGCTTAGGC TGGAACCCTT TAACCACTCC AGCACCACAG ATAGCTCCCA
    AGCACTGCAT CACTATGTAG TACAGAGCTC TAGTAAGCGA CAGCTTCCGG
    GCTAAGAACA GACCAAAAGT AACCGCTGGG TTGATGTGTC CACCTGAGAG
    TTACATATAA AAAAAATGCA TTCCAAGATT AGGCTAAAGG ACACAATTCA
    TATTAGAAAA CTGCAAATTC CACCAAGATT GTAGCTTTCT GAGATTTCTT
    GAATCAGATA CAAATGGAAC AAGTTCAGGC TAAGAAGCTA TAAATCTAAA
    CACAATTTTC TCAAGATTAT AGCTTTATCG

AT3G61430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1A
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
Computational Description
plasma membrane intrinsic protein 1A (PIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10784 Blast hits to 10748 proteins in 2216 species: Archae - 97; Bacteria - 5154; Metazoa - 1474; Fungi - 450; Plants - 2515; Viruses - 2; Other Eukaryotes - 1092 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1A
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
Computational Description
plasma membrane intrinsic protein 1A (PIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10784 Blast hits to 10748 proteins in 2216 species: Archae - 97; Bacteria - 5154; Metazoa - 1474; Fungi - 450; Plants - 2515; Viruses - 2; Other Eukaryotes - 1092 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61440.3

Model type
Protein coding
Short Description
cysteine synthase C1
Curator Summary
Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway.
Computational Description
cysteine synthase C1 (CYSC1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase isoform C (TAIR:AT3G59760.3).
Link
InterPro Scan - TAIR