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53-3111-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501457 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3111-1 - 5-prime edge 
    NGGACCAAGC CGGNTACTCA GGCTCCCTCT CCTCCGTNTC TTTNAACCTT 
    CCTTATCTCC AGACCCTCGA TCTCTCCGGC AACTACTTCT CCGGTCCACT 
    TCCCGACTCG CTCTCCAATC TCACCCGTCT CACCCGCCTC ACTGTGTCCG 
    GAAACTCCTT TTCCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501574 [Map]; Strand: c
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -928; Region: promoter
    Flanking Genome Sequence: 53-3111-1 - 3-prime edge 
    TGGTCCAGAC TGAGCTCCGT GACCCGACCC GATCCGGTAA CGACGGAGTC 
    GCAGCGGAAC CCACAAGTGA ATGTGTCGCT GAATATATTG TCGCAGGGAT 
    CGACGGAGAA ATCCCAAGAA CTCAGGCAAG AGCCTGGACT CATGGATTTG 
    GCATCCACTG AGTTCTTGAA GTCTTTGAGA GCTGCCACGT NACCCCAGAA 
    AGTCTTGGAC TCTGCTGAAG ATAAAGTGAG CAAAAGAAGA AGAACAAGGG 
    AAATAAGTGA AGCCATTACA AAAGAGAGAT GGTTAGCTCT GCTGAGAGAT 
    GTTTGGAAGA AGAA

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR