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Mutant Lines
53-3116-1

53-3116-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 29447318 [Map]; Strand: w
- AT1G78260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)
- AT1G78260.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)

GTTTTTGGGT TACATATATC ATCATCATTG GAGACTGCCA TATTTGTTAA 
TCGTGATATT AATTTAACTA ATGTCTCAAA CAAGCTACTA CCGATCACCG 
TTCGGAGACA CNGACCTTAC ACCAAAGTGT TCGTCGGAGG ATTAGCGTGG 
GAAACTCCTA CCGACGAAAT GCGTCGTTAC TTCGAACAGT TCGGAGAGAT 
TCTTGAAGCC GTCATCATCA CCGATAAAAA CACCGGCAAG TCTAAAGGCT 
ACGGATTCGT AAGTTATATT TTCTTAATTC ACACAATGTT TTTATCTCTT 
TTGGTATGCT TAAGG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 29447202 [Map]; Strand: w
  - AT1G78260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G78260.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 53-3116-1 - 3-prime edge
```
CCAAAAACAG ATAAAAATTG AATAAATAAA TAATTATGGA AAATTGTGTT 
TGTCTAAAAC ATTAGGGAAA CAAAAAAAAA AAAANAAANT GGGNNNGGCC 
AAANTGGG
```

AT1G78260.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 19754 Blast hits to 15639 proteins in 805 species: Archae - 2; Bacteria - 1288; Metazoa - 9939; Fungi - 2340; Plants - 4423; Viruses - 0; Other Eukaryotes - 1762 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78260.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR