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53-3130-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22565565 [Map]; Strand: c
      • AT5G55750.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3130-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATTC CAAAGTAATA CAAATGCGTT TTAATTTGTC 
    ATTACATGAC AAAAATTTGT CTACATCAGC TAAAAGACAC AAACGTTTTC 
    TTCAGAAATC CTCCAACACC CCCGACATGT GTAATGCCAT GCGGCAGATA 
    ATACGAAACC GAGGAAAAAA TTCATCTCTT TTTATTATAA ATCTCAAAAC 
    CAAAGACAAA CACTCATCAT TTTCTCTAAG TCATCATCAT GTTGTCTCTT 
    CAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22565575 [Map]; Strand: c
      • AT5G55750.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3130-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAAGATATAT ACCGATCGGT ACCATTTTCA TCAATAGATG TCCCAAAGAA 
    GATGGATTAT GAGTAACATG AGTTTTAAGA TAATTGTGAC AAGTCGAATG 
    AATCTTTTGC TATGGGAAAG ATGAAGAACT ATGAATTGTT TCAAGTAATC 
    AAATAATCAA ATTTTACGTT GAAGACGGGG TGTTACACGA TGGATAATAT 
    GTGGCTCCAA CTAAGCTGTT GCATGCTCCC GAGTTGCAAT TACATTCAAT 
    CGCTCTGGCC CATGTAGTGA AGGCTGACAA GAGCAACCAG AAAAAAGTTG 
    ATGAGGGTCA TTTGTTAGTA AGGTGCTAGC CTTCACAATA AACTGCTTAA 
    TTATGATAAC TTTAACCCTC GCTTTGAAAT TACCATCGAT GATGGCTTTT 
    TGGACAAGTT TGGAAGAAGT ATCCACCAAA CTCATGATTT GCTTGTGCAT 
    TCATGGTGCT GGGTGAGTTT GTTTTGACTA GTCTGTTGTA GGATTCAACT 
    ACTTTTCAAA TGATGCACAA GCTAGTGTTG GGGTGTGACT ACACTTTCGG 
    ACAGTATTGT ATCCGAGGAA ATATTAATTC TGATGGTGTG GGGTTGTGGT 
    CTTGTCGAGA GTGGAATGAG GACTAACATA ACCCATATTT AAGTCTGCAT 
    GCTGCATGTT TTTTATTAAA AAACTGTGTG ANGTATGTTA ATCTTGATAA 
    ATAAATTGAT GATATATAAC AATACTT

AT5G55750.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR