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53-3135-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23450846 [Map]; Strand: w
      • AT3G63500.1 - [+] show detail - Protein of unknown function (DUF1423)
        Distance: -651; Region: promoter
      • AT3G63500.2 - [+] show detail - Protein of unknown function (DUF1423)
        Distance: -648; Region: promoter
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3135-1 - 5-prime edge 
    GAGNGNTCAN NAACANANNN ATNANGNNCN GACGCGAGGC CCGNGNCCTA 
    CNNAGTGCAA CGCNTGNGGN GGNTACACNT GAAAANGATG GCNNGATTGA 
    AAGACNNGNC CACCAGCGNG ANCAANNCGA TGCNAGNAAN GNANNCGCNN 
    AAANNACGCG ACGGNNCGAA GAATANNGNC AGACANGNAC GTTNNTNTGC 
    ACTCNGCCGC ANGACAGGNA CTTANNGGTC TTCTCCCNAN CAACANACTA 
    TTGATCTCCA ACTTGGAGGT AGCNANGTGN AAAACCTTGC AAAGGCTGCT 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1993112 [Map]; Strand: c
      • AT3G06483.1 - [+] show detail - pyruvate dehydrogenase kinase
        Distance: -368; Region: promoter
    Flanking Genome Sequence: 53-3135-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    AAGTTCTAAA TCCAACATAT AAAAACAGTA TATAGTTCGA TCCATATACA 
    TAGATAAATG TCCAAAAGGC TATCGACCCG TTCTTTTGAT ATTTGGCCCT 
    AAAGCCCAAT AAGCCATAAC ATAAGCT

AT3G06483.1

Model type
Protein coding
Short Description
pyruvate dehydrogenase kinase
Curator Summary
Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.
Computational Description
pyruvate dehydrogenase kinase (PDK); FUNCTIONS IN: ATP binding, pyruvate dehydrogenase (acetyl-transferring) kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: signal transduction, peptidyl-histidine phosphorylation, phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, core (InterPro:IPR005467), Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial (InterPro:IPR018955), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); Has 1925 Blast hits to 1799 proteins in 531 species: Archae - 0; Bacteria - 712; Metazoa - 467; Fungi - 468; Plants - 102; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1423)
Computational Description
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 795 Blast hits to 695 proteins in 144 species: Archae - 6; Bacteria - 39; Metazoa - 207; Fungi - 61; Plants - 263; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63500.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1423)
Computational Description
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 3195 Blast hits to 2635 proteins in 392 species: Archae - 10; Bacteria - 381; Metazoa - 1310; Fungi - 308; Plants - 351; Viruses - 11; Other Eukaryotes - 824 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.1

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.2

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
Link
InterPro Scan - TAIR