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53-3136-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10460099 [Map]; Strand: w
      • AT1G29880.1 - [+] show detail - glycyl-tRNA synthetase / glycine--tRNA ligase
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 53-3136-1 - 5-prime edge 
    CTTGGAAATG ATTTTGGTTG CTTCCTCGAA CTGTTGGTTT TTAACAAGCG 
    GGAAAATCTT GCACTTGATA GGTGCTACAA GAGGAGAGAA ACCGGAACAC 
    AATCANCTGT TCATCCCCTG CCTTGCTTGG CCTTGNGCNT GTAACAATGC 
    TCGAACAGAC AATACATGAT CCGACCAATC CCAAACGATG GTTCAATCAC 
    AACCGGAGTG AAATCCCGGG TGCTCACTTT GTCCATCTTC TTTGAGATTG 
    ACACCATGTT CTTCTTGATG GTCACGTTTT TCCCGAGGGT ACACACGTAA 
    AATTCCACTT CCCCTTTGGA TTCCAAGTTT GCCTTCATCT CAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10459977 [Map]; Strand: w
      • AT1G29880.1 - [+] show detail - glycyl-tRNA synthetase / glycine--tRNA ligase
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 53-3136-1 - 3-prime edge 
    TTTCCAAGGA ACTTAANTNT AATGGCNTCA AACAGGATGT TGACATCACT 
    GGTNCGTTAA ACATATNGAA ACTTAACTTT ATAANTTTAA AATGGTCCAA 
    ACCGNGTANG AAATTGTGTA TGTGTATGTG AACAGGTACA TCGATNGGAA 
    AGAGATNCGC NNAGATCTGA TGAGATTGGT GTGCCATTTG CGATAACAGT 
    GGACTCAGAG ACATCAGTGA CAATCAGAGA AAGAGATAGC AAAGACCAAG 
    TCCGAGTCAG CTTGAAAGAG GCAGCTTCCG TCGTGACCTC CATGGCTGAA 
    GAGAAGATGA CGTGGCAAGA CGTTTGGGCA AGCT

AT1G29880.1

Model type
Protein coding
Short Description
glycyl-tRNA synthetase / glycine--tRNA ligase
Computational Description
glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), S15/NS1, RNA-binding (InterPro:IPR009068), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Anticodon-binding (InterPro:IPR004154), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 6392 Blast hits to 4464 proteins in 1181 species: Archae - 269; Bacteria - 3324; Metazoa - 242; Fungi - 171; Plants - 75; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).
Link
InterPro Scan - TAIR