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53-3137-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 42827 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3137-1 - 5-prime edge 
    CACCAGGCAC GATCCTCTTG AGAATTCGGA TCTTCTCGCT GATCCTTTCC 
    CGACGCCGAC GAGCAACCAC CGTCTGAGGA TCGTCGCTTA TCCTTACGTT 
    ACGGCGGTTC GGCTTAGGGA CCGTGGCAGG GTCGATGTCT ACGGGCTGCA 
    TGACGGCGAT CATATACTGC ATCTCCTTCA TCTACCTCGA C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 42704 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3137-1 - 3-prime edge 
    GGTGCGAAGA TGGACACAGC TTCCATGCTC GACGAAGCCA TCCGTTACAC 
    CAAGTTCTTG AAACGGCAGG TGAGGATTCT TCAGCCTCAC TCTCAGATTG 
    GAGCTCCTAT GGCTGACCCC TCTTACCTTT GTTATTACCA CAACTCCCAA 
    CCCTGATGAA CTACACAGAA GCTCGCTAGC TAGACATTTG GTGTCATCCT 
    CTCAACCTTT TTCATGTTGA TATATTATAT ATAGATGCAT AAAGATTCGA 
    TCCAAGATTG TATGGATGTT TTAATATTAT TATTCTAAGA TATATGATGT 
    ACAATTGTGT ACCAAGTTTC TTTATCTTGA TATCATATGC ATAAATAATT 
    GGTGAATAAA AAGAAGATAT TGATTGTTAA TTAGGGTTTG ATCATTCTGT 
    ATGCAAGCT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR