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53-3149-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952623 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2021; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4559; Region: intergenic
    Flanking Genome Sequence: 53-3149-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGA ACAAGGTTNA AAGCTACCAN GNCGGGCCGT 
    AAGACCACGC GNAGCCCTNT NGCTTTGTGT NTTCTAACAA GGAAACACAT 
    ACCTTNGGCT TTTAAGATCA GGGTNGCAGG TTTAAGTTGT TATNCTCAAT 
    CATACACATG ACATCAAGTC ATATGACGNC TCCAAAACAC TAACCAACCN 
    TNTTCTTGCT TCTCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24213527 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -569; Region: promoter
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -363; Region: promoter
    Flanking Genome Sequence: 53-3149-1 - 3-prime edge 
    TTAAGACTAC TTAGAACGAC TTCGTTTTAA AAGAAGATTC GTGAAAGAAC 
    CAAGGCCCGC GAAAACCAAT GGACCTAAAT TATTTTGGTC CCATTCGAGA 
    TGGGGTTTTA TAGTAGTCAG TGGAAGGCCT AGTGATTTCC TCCAAATCTA 
    TTTGCAACAT ATTGTTTGGT TCTCTTTCTT ATTTTGATTT GTAAGTTTGT 
    ATACAAAAGT GGTGCCAACA ACAAAACACA AACCCAAACC CATTTGTCAT 
    TTTACTATAA TGTCTTTTGA GATTACTCCA ACACAAAGGA CGACCTTTGT 
    CCGAACAATG TAAGTACTAT TTGTATGAAT CCGTTGGAGG ACGTTGCCCT 
    ACTTACTGCA GGCAACAAAG CAACAAGATT TGTCTAGACG GCATAACTCA 
    AGAGTTTGTT GCAAGAGAAA ACAGAGAGAT TTAATGAGAC ATGAACTCTA 
    TATAGAAAGT CTTAATTCAA CATGAAAACA TCTCTCACGC CCAAA

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR