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53-3152-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10227 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3152-1 - 5-prime edge
    TTTGAGTCAC ATGACAAACA CGATTCGACA AAAAAAGGAA GAAACGAAGA 
    ATCACCTTGG AGCAAGAGAT CGGCCATAGA AGGTAGAGGA GCTGTCGATT
    CGAGCGCCTT GGTTGGCGTA GAATCCGAGA CGGACTGAAG AATCCGGCCA
    GCGACTTCCC ACCGGAAACC ATCGCCGCTG GAATCGGGAA ATAATTGCCA
    CGTCGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10111 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3152-1 - 3-prime edge
    GACTCAAAGG AGATTGAATT ATTATTTGAT GCTTCAAGGA TGCTCGAAGC 
    TTATAGCACG GGAAGAAGCG ATGCCTGGGG AAATCCCAAT GTTCAGGACT
    GGGCTAGGGA AGTCTGTAGT TCTTAAAGAG TCTTCGATTG CTAAAGCCAA
    ATCCATTTTA GCAGAGAAGG TTACTTACTC AGGTACTTTA TGTGACAGTA
    TTGAATTCCC TTGACTAGTC ATTTGTTTCT GAATTCCCTT GAATTGTTAC
    TTAATGTTGG TGAAAATGGT TTCCTGAAAA TCTTTTGAAT GTTCCATGTT
    CTTGGCTACA CTTTAGATTT GCGGAACACA AATTGCTCAA TTCCCCAAAT
    GAGACAAGTG GATACAGCTG AAACTTTGCC AATGTTCAGG ACGGCCTCGG
    GGAAATCTGT CCCTTTGAAA GAGTCTTCAA TTGCCAAAGC TATGTCTATT
    CTAGGAAGTG ATAAGATTAT TGACTCAGGT GTGT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR