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Mutant Lines
53-3158-1

53-3158-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24201786 [Map]; Strand: c
  - AT5G60100.2 - [+] show detail - pseudo-response regulator 3
    Distance: -422; Region: promoter
  - AT5G60100.3 - [+] show detail - pseudo-response regulator 3
    Distance: -382; Region: promoter
  - AT5G60100.1 - [+] show detail - pseudo-response regulator 3
    Distance: -422; Region: promoter
  - AT5G60110.1 - [+] show detail - pumilio 18
    Distance: -168; Region: promoter
Flanking Genome Sequence: 53-3158-1 - 5-prime edge
```
GACTGTGGTG ATGCGTAGAG TATTTATAGA AAAGTTAGGG CTTTTGTTTT 
TCTAGTTACA ATTACACAAC TCGGATTACT ACTAGGAAAA GGAAACGGAA 
ACTTATTTGG TGGAGTTTCC TTTTTGTTTT GTCAATTTTC CTTTTTTCTT 
TGCATTTTCG TAACTGTCAT GATTTTAATC TATCTTTTTT TGGTGTGTGA 
AGATAATAAT AATCTATCTG AAACAAATGG AAATATGTAA TTTGTTTTTT 
GTAAATCGAC AATAACTTAA CATGTCGATA ATCTCTAAAC CAACCCCTCG 
CAGTCCAAGC TTTTGATTTT GTTCATCTCC CTTCGA
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24202917 [Map]; Strand: c
- AT5G60110.1 - [+] show detail - pumilio 18
  Distance: 0; Region: exon1 (CDS)

TAGACATCTT GAAAGTAGAT CTCACGGAAG CAACATTGCA AACATCTTGG 
ACTCATTTAG GCTTCGTTGC TGATTATAAC TCTGTGTTTA TTTTTCAAAC 
CAGCTTACAA TAGTTTAATT GTTCCGGTGT TCAATGTAGT TACATAACTC 
TGGTAAGAAA AGTGTTTCGT CATAAACTAC TATTTTGTTT TGTAAAGTTG 
GAGTTCTTAT GAAGAAGAGT TTACACAATT TGAAAAACGA AATTGGCTAA 
TACATTTCTT CTTGTGTTCA TC

AT5G60100.1

Model type: Protein coding
Short Description: pseudo-response regulator 3
Curator Summary: Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description: pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60100.2

Model type: Protein coding
Short Description: pseudo-response regulator 3
Curator Summary: Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description: pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1).
Link: InterPro Scan - TAIR

AT5G60100.3

Model type: Protein coding
Short Description: pseudo-response regulator 3
Curator Summary: Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description: pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1).
Link: InterPro Scan - TAIR

AT5G60110.1

Model type: Protein coding
Short Description: pumilio 18
Curator Summary: Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description: pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR